CN188901 | Citrus Genome Database

Overview


Name	CN188901
Unique Name	CN188901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	770

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7281	contig	Csv1_Contig7281:973..1741.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_GAEGA (Actin OS=Gaeumannomyces graminis var. avenae GN=ACT PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.564e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  +DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGLSDRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 52.7582 bits (125), Expect = 2.564e-39
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PG+
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGL 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_CEPAC (Actin, gamma OS=Cephalosporium acremonium GN=ACT PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.564e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  +DRM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGLSDRMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 52.7582 bits (125), Expect = 2.564e-39
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RKDLYGNIV+SGG+TM+PG+
Sbjct:  283 MKCDVDVRKDLYGNIVMSGGTTMYPGL 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.340e-39
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM+KE+TALAPS+MKIK++APPERKYSVWIGGSILASL TFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLPTFQQMWISKEEYDESGPSIVHRKCF 376

HSP 2 Score: 54.299 bits (129), Expect = 3.340e-39
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N+VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYSNVVLSGGSTMFPGI 310

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_THELA (Actin OS=Thermomyces lanuginosus PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.340e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KE+TALAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMW+SK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKELTALAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWVSKQEYDESGPSIVHRKCF 375

HSP 2 Score: 51.9878 bits (123), Expect = 3.340e-39
Identity = 21/27 (77.78%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            +KCD D+RKDLYGNIV+SGG+TM+PGI
Sbjct:  283 IKCDVDVRKDLYGNIVMSGGTTMYPGI 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_PLAMG (Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.352e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 51.6026 bits (122), Expect = 4.352e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMFPGI 310

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_CRAGI (Actin OS=Crassostrea gigas PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 4.352e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KE+TALAP +MKIKV+APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEVTALAPPTMKIKVIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 53.5286 bits (127), Expect = 4.352e-39
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY NIVLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYANIVLSGGTTMFPGI 310

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BRALA (Actin, cytoplasmic OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.670e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 51.2174 bits (121), Expect = 5.670e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TMFPGI
Sbjct:  283 MKCDIDIRKDLYANTVLSGGTTMFPGI 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BRAFL (Actin, cytoplasmic OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.670e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 51.2174 bits (121), Expect = 5.670e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TMFPGI
Sbjct:  283 MKCDIDIRKDLYANTVLSGGTTMFPGI 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BRABE (Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.670e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 51.2174 bits (121), Expect = 5.670e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TMFPGI
Sbjct:  283 MKCDIDIRKDLYANTVLSGGTTMFPGI 309

[Close]

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 7.386e-39
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 7.386e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310

The following BLAST results are available for this feature:

BLAST of CN188901 vs. ExPASy Swiss-Prot

BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398


Match Name	E-value	Identity	Description
ACT_GAEGA	2.564e-39	88.41	Actin OS=Gaeumannomyces graminis var. avenae GN=AC...	[more]
ACTG_CEPAC	2.564e-39	88.41	Actin, gamma OS=Cephalosporium acremonium GN=ACT P...	[more]
ACT3_DICDI	3.340e-39	86.96	Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S...	[more]
ACT_THELA	3.340e-39	88.41	Actin OS=Thermomyces lanuginosus PE=3 SV=1	[more]
ACT_PLAMG	4.352e-39	89.86	Actin, adductor muscle OS=Placopecten magellanicus...	[more]
ACT_CRAGI	4.352e-39	88.41	Actin OS=Crassostrea gigas PE=2 SV=1	[more]
ACTC_BRALA	5.670e-39	89.86	Actin, cytoplasmic OS=Branchiostoma lanceolatum PE...	[more]
ACTC_BRAFL	5.670e-39	89.86	Actin, cytoplasmic OS=Branchiostoma floridae PE=2 ...	[more]
ACTC_BRABE	5.670e-39	89.86	Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 ...	[more]
ACT2_DROME	7.386e-39	91.30	Actin-42A OS=Drosophila melanogaster GN=Act42A PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA