CN188901 | Citrus Genome Database

Overview


Name	CN188901
Unique Name	CN188901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	770

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTD_STRPU (Actin, cytoskeletal 2B OS=Strongylocentrotus purpuratus GN=CYIIB PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_HELTI (Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BIOTE (Actin, cytoplasmic OS=Biomphalaria tenagophila PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BIOPF (Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BIOOB (Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BIOGL (Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_BIOAL (Actin, cytoplasmic OS=Biomphalaria alexandrina PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTA_STRPU (Actin, cytoskeletal 1A OS=Strongylocentrotus purpuratus GN=CYIA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_STRFN (Actin-15B OS=Strongylocentrotus franciscanus PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_STRFN (Actin-15A OS=Strongylocentrotus franciscanus PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANCVLSGGSTMFPGI 310

The following BLAST results are available for this feature:

BLAST of CN188901 vs. ExPASy Swiss-Prot

BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398


Match Name	E-value	Identity	Description
ACTD_STRPU	7.386e-39	88.41	Actin, cytoskeletal 2B OS=Strongylocentrotus purpu...	[more]
ACTC_HELTI	7.386e-39	88.41	Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1	[more]
ACTC_BIOTE	7.386e-39	88.41	Actin, cytoplasmic OS=Biomphalaria tenagophila PE=...	[more]
ACTC_BIOPF	7.386e-39	88.41	Actin, cytoplasmic OS=Biomphalaria pfeifferi PE=3 ...	[more]
ACTC_BIOOB	7.386e-39	88.41	Actin, cytoplasmic OS=Biomphalaria obstructa PE=3 ...	[more]
ACTC_BIOGL	7.386e-39	88.41	Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 S...	[more]
ACTC_BIOAL	7.386e-39	88.41	Actin, cytoplasmic OS=Biomphalaria alexandrina PE=...	[more]
ACTA_STRPU	7.386e-39	88.41	Actin, cytoskeletal 1A OS=Strongylocentrotus purpu...	[more]
ACT2_STRFN	7.386e-39	88.41	Actin-15B OS=Strongylocentrotus franciscanus PE=2 ...	[more]
ACT1_STRFN	7.386e-39	88.41	Actin-15A OS=Strongylocentrotus franciscanus PE=3 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA