CN188901

Overview
NameCN188901
Unique NameCN188901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:973..1741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_LYTPI (Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_HELTB (Actin CyI, cytoplasmic OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_HELER (Actin CyI, cytoplasmic OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.386e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 7.386e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_MAIZE (Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.387e-39
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRMSKEIT+L PSSMK+KVVAPP RKYSVWIGGSILASLSTFQQMWISKGEYDE+GP IVH KCF
Sbjct:  307 PGIADRMSKEITSLVPSSMKVKVVAPPRRKYSVWIGGSILASLSTFQQMWISKGEYDETGPGIVHMKCF 375

HSP 2 Score: 54.299 bits (129), Expect = 7.387e-39
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLYGN+VLSGG TMFPGI
Sbjct:  283 MKCDVDIRKDLYGNVVLSGGFTMFPGI 309
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT3_ARTSX (Actin, clone 302 (Fragment) OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 7.401e-39
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEIT LAPSSMKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  259 PGIADRMQKEITMLAPSSMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 327

HSP 2 Score: 51.6026 bits (122), Expect = 7.401e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TMFPGI
Sbjct:  235 MKCDVDIRKDLYANTVLSGGTTMFPGI 261
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT8_XENLA (Actin, cytoplasmic type 8 OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT5_XENLA (Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT5_CHICK (Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT5C_ANOGA (Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
The following BLAST results are available for this feature:
BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
ACT1_LYTPI7.386e-3988.41Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV... [more]
ACT1_HELTB7.386e-3988.41Actin CyI, cytoplasmic OS=Heliocidaris tuberculata... [more]
ACT1_HELER7.386e-3988.41Actin CyI, cytoplasmic OS=Heliocidaris erythrogram... [more]
ACT1_MAIZE7.387e-3986.96Actin-1 OS=Zea mays GN=ACT1 PE=3 SV=1[more]
ACT3_ARTSX7.401e-3989.86Actin, clone 302 (Fragment) OS=Artemia sp. PE=2 SV... [more]
ACT8_XENLA9.623e-3989.86Actin, cytoplasmic type 8 OS=Xenopus laevis PE=3 S... [more]
ACT5_XENLA9.623e-3989.86Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 S... [more]
ACT5_CHICK9.623e-3989.86Actin, cytoplasmic type 5 OS=Gallus gallus PE=3 SV... [more]
ACT5C_ANOGA9.623e-3989.86Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1[more]
ACT4_BOMMO9.623e-3989.86Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA
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