CN188901

Overview
NameCN188901
Unique NameCN188901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_ONCVO (Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTM+PGI
Sbjct:  284 MKCDIDIRKDLYANNVLSGGSTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT1_DROME (Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 SV=4)

HSP 1 Score: 130.954 bits (328), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 50.447 bits (119), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMYPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTM_APLCA (Actin, muscle OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.623e-39
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEIT+LAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEITSLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 51.6026 bits (122), Expect = 9.623e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT2_SCHMA (Actin-2 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.623e-39
Identity = 62/69 (89.86%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK+VAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGP IVHRKCF
Sbjct:  308 PGIADRMQKEITALAPSTMKIKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376

HSP 2 Score: 51.6026 bits (122), Expect = 9.623e-39
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGTTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTY_LIMPO (Actin-11 OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.623e-39
Identity = 61/69 (88.41%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEI ALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEICALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 9.623e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTC_PISOC (Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.623e-39
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KE+TALAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  308 PGIADRMQKEVTALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

HSP 2 Score: 52.7582 bits (125), Expect = 9.623e-39
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGGSTMFPGI
Sbjct:  284 MKCDVDIRKDLYANTVLSGGSTMFPGI 310
[Close]
BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_CANDC (Actin OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.623e-39
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = -1 
Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  A+RM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVH KCF
Sbjct:  308 PGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHHKCF 376

HSP 2 Score: 53.1434 bits (126), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -3 
Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RK+LYGNIV+SGG+TMFPGI
Sbjct:  284 MKCDMDVRKELYGNIVMSGGTTMFPGI 310
The following BLAST results are available for this feature:
BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
ACT4_ARTSX9.623e-3989.86Actin, clone 403 OS=Artemia sp. PE=2 SV=1[more]
ACT3B_HELAM9.623e-3989.86Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=... [more]
ACT3A_HELAM9.623e-3989.86Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACT2_ONCVO9.623e-3989.86Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1[more]
ACT1_DROME9.623e-3989.86Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 ... [more]
ACTM_APLCA9.623e-3988.41Actin, muscle OS=Aplysia californica PE=2 SV=1[more]
ACT2_SCHMA9.623e-3989.86Actin-2 OS=Schistosoma mansoni PE=2 SV=1[more]
ACTY_LIMPO9.623e-3988.41Actin-11 OS=Limulus polyphemus PE=2 SV=1[more]
ACTC_PISOC9.623e-3986.96Actin, cytoplasmic OS=Pisaster ochraceus PE=3 SV=1[more]
ACT_CANDC9.623e-3986.96Actin OS=Candida dubliniensis (strain CD36 / CBS 7... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA
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