CN188901 | Citrus Genome Database

Overview


Name	CN188901
Unique Name	CN188901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	770

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Rind cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7281	contig	Csv1_Contig7281:973..1741.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACT_CANAL (Actin OS=Candida albicans GN=ACT1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.623e-39
Identity = 60/69 (86.96%), Postives = 64/69 (92.75%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  A+RM KEITALAPSSMK+K++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVH KCF
Sbjct:  308 PGIAERMQKEITALAPSSMKVKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHHKCF 376

HSP 2 Score: 53.1434 bits (126), Expect = 9.623e-39
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD D+RK+LYGNIV+SGG+TMFPGI
Sbjct:  284 MKCDMDVRKELYGNIVMSGGTTMFPGI 310

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_XENTR (Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_XENLA (Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_TRIVU (Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_TRISC (Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_RAT (Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_RANLE (Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_MOUSE (Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_HUMAN (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

BLAST of CN188901 vs. ExPASy Swiss-Prot
Match: ACTG_CHICK (Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.624e-39
Identity = 62/69 (89.86%), Postives = 65/69 (94.20%), Query Frame = -1

Query:  489 PVFADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 695
            P  ADRM KEITALAPS+MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  307 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

HSP 2 Score: 50.447 bits (119), Expect = 9.624e-39
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = -3

Query:  688 MKCDGDIRKDLYGNIVLSGGSTMFPGI 768
            MKCD DIRKDLY N VLSGG+TM+PGI
Sbjct:  283 MKCDVDIRKDLYANTVLSGGTTMYPGI 309

The following BLAST results are available for this feature:

BLAST of CN188901 vs. ExPASy Swiss-Prot

BLAST of CN188901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398


Match Name	E-value	Identity	Description
ACT_CANAL	9.623e-39	86.96	Actin OS=Candida albicans GN=ACT1 PE=3 SV=1	[more]
ACTG_XENTR	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg...	[more]
ACTG_XENLA	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE...	[more]
ACTG_TRIVU	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=A...	[more]
ACTG_TRISC	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Triakis scyllium GN=actg1 ...	[more]
ACTG_RAT	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1...	[more]
ACTG_RANLE	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=...	[more]
ACTG_MOUSE	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1...	[more]
ACTG_HUMAN	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1...	[more]
ACTG_CHICK	9.624e-39	89.86	Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS06_0001A02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN188901 ID=CN188901; Name=CN188901; organism=Citrus sinensis; type=EST; length=770bp
GAGGTTTTTTTTGAAAGCTCTCAAACAAGTATTAAATATATTTTAATAAC
CAAATTTATGACTGCAAGCTGACACTAATTAAAGTTTTCTCATACAATAG
CTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAAAAAACCTTCAAA
TATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAACCACTCTTCATC
TCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGAAAAAAAAGAAAA
AAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGAAGACGGTTGAGT
ACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTGTATAATAACATC
AATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTAGCACTTCTCCAT
GTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAACCAACTAAATGG
AAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTAGAAGCATTTCCT
GTGGACAATGGATGGACCAGACTCATCATACTCGCCCTTTGAGATCCACA
TCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCTCCAATCCAAACA
CTGTATTTTCTCTCTGGTGGAGCCACGACCTTGATCTTCATGCTGCTTGG
AGCAAGTGCTGTGATTTCCTTGCTCATACGGTCGGCAAATACCGGGGAAC
ATAGTTGAACCCCCACTGAGAACAATGTTACCATACAGATCCTTTCTAAT
ATCCCCATCACACTTCATGA