CN188900

Overview
NameCN188900
Unique NameCN188900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NEIG2 (Bifunctional protein folD OS=Neisseria gonorrhoeae (strain NCCP11945) GN=folD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTPKG + LL   G++  GK AVV+G SNIVG P +L L    ATV++ H+ T+N     + ADI++   G+ N V+G W+KPGAVV+DVG   +D   D S      L GDV +E A   A++ITPVPGGVGPMT+A L+ NTL +A
Sbjct:  127 NVGRLAVK--MPLMRPCTPKGVMTLLEAYGIDPKGKKAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAAADILVVGVGIPNFVKGGWIKPGAVVIDVGINRLD---DGS------LCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTLHAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NEIG1 (Bifunctional protein folD OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=folD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTPKG + LL   G++  GK AVV+G SNIVG P +L L    ATV++ H+ T+N     + ADI++   G+ N V+G W+KPGAVV+DVG   +D   D S      L GDV +E A   A++ITPVPGGVGPMT+A L+ NTL +A
Sbjct:  127 NVGRLAVK--MPLMRPCTPKGVMTLLEAYGIDPKGKKAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAAADILVVGVGIPNFVKGGWIKPGAVVIDVGINRLD---DGS------LCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTLHAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_HALHL (Bifunctional protein folD OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=folD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 78/165 (47.27%), Postives = 109/165 (66.06%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G LA+R   P   PCTP+G + LL  +G+E+ G++AVV+G+SNIVG P +L L     TV++ H+ T+N  +   +AD+V+A+ G   L++G W+  GAVV+DVG   +D           +L GDV +E A + AS ITPVPGGVGPMTVA LL NTLD+A+
Sbjct:  127 NMGRLALR--LPGLRPCTPRGVMTLLHHTGIELEGRDAVVLGQSNIVGRPMTLELLNARCTVTVCHSRTRNVAERVRQADLVVASVGKPGLIQGDWIGEGAVVIDVGINRLDSG---------KLTGDVDFEAASQRASWITPVPGGVGPMTVATLLENTLDAAR 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_BACHD (Bifunctional protein folD OS=Bacillus halodurans GN=folD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 77/155 (49.68%), Postives = 100/155 (64.52%), Query Frame = -1
Query:  157 EPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 621
            E  F+PCTP G + +L  + VEI GK+ VV+GRSNIVG P   L+   HATV+  H+ TKN  +IT +ADI+I A G A  +  S +K GAVV+DVG   VD           +L GDV +E    +AS +TPVPGGVGPMT+ MLL+NT+ +AK
Sbjct:  134 EDTFLPCTPFGVLVMLQEANVEIAGKHVVVVGRSNIVGKPVGQLMLNEHATVTYCHSRTKNLTEITKQADILIVAVGRARFIDASHVKEGAVVIDVGINRVD----------GKLCGDVDFESVREVASHLTPVPGGVGPMTITMLLANTIQAAK 278          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD1_PSESM (Bifunctional protein folD 1 OS=Pseudomonas syringae pv. tomato GN=folD1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.823e-34
Identity = 82/165 (49.70%), Postives = 104/165 (63.03%), Query Frame = -1
Query:  157 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 651
            N+G LA R   PL  PCTPKG I LL  +GV++ G +AVV+G SNIVG P ++ L     TV++ H  TK+     S AD+V+ AAG   LV+G W+KPGA+V+DVG    D           +L+GDV YE A+  A  ITPVPGGVGPMT A LL NTL +A+
Sbjct:  127 NVGRLAQR--IPLLRPCTPKGIIALLESTGVDLYGLDAVVVGASNIVGRPMAMELLLAGCTVTVTHRFTKDLAGHVSRADLVVVAAGKPGLVKGEWIKPGAIVIDVGINRQDDG---------KLVGDVVYETALPRAGWITPVPGGVGPMTRACLLENTLYAAE 280          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_WIGBR (Bifunctional protein folD OS=Wigglesworthia glossinidia brevipalpis GN=folD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 76/161 (47.20%), Postives = 102/161 (63.35%), Query Frame = -1
Query:  169 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 651
            NIG L  R  +P  +PCTPKG I LL    + ++G NAVV+G SNIVG P SL L     TV+I H  T N ++    A+++I A G A  + GSW+KPGA+V+DVG   +            +++GDV YE+A+  AS ITPVPGG+GPMT+AML+ NT+
Sbjct:  127 NIGRLCQR--KPTIVPCTPKGIIRLLKYYKINLLGLNAVVVGASNIVGRPMSLELLLEGCTVTITHRFTINLKKYIENAELLIVAIGKAEFIPGSWIKPGAIVIDVGINRLKSG---------KIVGDVNYEDAIEKASYITPVPGGIGPMTIAMLIENTM 276          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NEIMF (Bifunctional protein folD OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=folD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTPKG + LL   G++  GK AVV+G SNIVG P +L L    ATV++ H+ T+N     + ADI++   G+ N V+G W+KPGAVV+DVG   +D   D S      L GDV +E A   A++ITPVPGGVGPMT+A L+ NTL +A
Sbjct:  127 NVGRLAVK--MPLMRPCTPKGVMTLLEAYGIDPKGKKAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAGADILVVGVGIPNFVKGEWIKPGAVVIDVGINRLD---DGS------LCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTLHAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NEIMB (Bifunctional protein folD OS=Neisseria meningitidis serogroup B GN=folD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTPKG + LL   G++  GK AVV+G SNIVG P +L L    ATV++ H+ T+N     + ADI++   G+ N V+G W+KPGAVV+DVG   +D   D S      L GDV +E A   A++ITPVPGGVGPMT+A L+ NTL +A
Sbjct:  127 NVGRLAVK--MPLMRPCTPKGVMTLLEAYGIDPKGKKAVVVGASNIVGRPQALELLLARATVTVCHSATENLTDEVAGADILVVGVGIPNFVKGEWIKPGAVVIDVGINRLD---DGS------LCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTLHAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NEIMA (Bifunctional protein folD OS=Neisseria meningitidis serogroup A GN=folD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTPKG + LL   G++  GK AVV+G SNIVG P +L L    ATV++ H+ T+N     + ADI++   G+ N V+G W+KPGAVV+DVG   +D   D S      L GDV +E A   A++ITPVPGGVGPMT+A L+ NTL +A
Sbjct:  127 NVGRLAVK--MPLMRPCTPKGVMTLLEAYGIDPKGKKAVVVGASNIVGRPQALELLLARATVTVCHSATENLTDEVAGADILVVGVGIPNFVKGEWIKPGAVVIDVGINRLD---DGS------LCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTLHAA 279          
BLAST of CN188900 vs. ExPASy Swiss-Prot
Match: FOLD_NEIM0 (Bifunctional protein folD OS=Neisseria meningitidis serogroup C (strain 053442) GN=folD PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.299e-34
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  160 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDVSVDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA 651
            N+G LA++   PL  PCTPKG + LL   G++  GK AVV+G SNIVG P +L L    ATV++ H+ T+N     + ADI++   G+ N V+G W+KPGAVV+DVG   +D   D S      L GDV +E A   A++ITPVPGGVGPMT+A L+ NTL +A
Sbjct:  127 NVGRLAVK--MPLMRPCTPKGVMTLLEAYGIDPKGKKAVVVGASNIVGRPQALELLLARATVTVCHSATENLADEVAGADILVVGVGIPNFVKGEWIKPGAVVIDVGINRLD---DGS------LCGDVEFETAKERAAMITPVPGGVGPMTIATLMENTLHAA 279          
The following BLAST results are available for this feature:
BLAST of CN188900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_NEIG24.823e-3448.78Bifunctional protein folD OS=Neisseria gonorrhoeae... [more]
FOLD_NEIG14.823e-3448.78Bifunctional protein folD OS=Neisseria gonorrhoeae... [more]
FOLD_HALHL4.823e-3447.27Bifunctional protein folD OS=Halorhodospira haloph... [more]
FOLD_BACHD4.823e-3449.68Bifunctional protein folD OS=Bacillus halodurans G... [more]
FOLD1_PSESM4.823e-3449.70Bifunctional protein folD 1 OS=Pseudomonas syringa... [more]
FOLD_WIGBR6.299e-3447.20Bifunctional protein folD OS=Wigglesworthia glossi... [more]
FOLD_NEIMF6.299e-3448.78Bifunctional protein folD OS=Neisseria meningitidi... [more]
FOLD_NEIMB6.299e-3448.78Bifunctional protein folD OS=Neisseria meningitidi... [more]
FOLD_NEIMA6.299e-3448.78Bifunctional protein folD OS=Neisseria meningitidi... [more]
FOLD_NEIM06.299e-3448.78Bifunctional protein folD OS=Neisseria meningitidi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001A02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188900 ID=CN188900; Name=CN188900; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTTTTTTTATATAATCTACGTGCAGGTTAATTGATATTAGACT
TGAAAACTATGTTATTTCAATCATTGTGGAAGCAAAAAATAGTACAATTG
AATACAATTTTTTGAGAAGGATAATGCATTGGCAGTCAAGTAAAGCCGTA
TGCCCGTTTGGCAGAGTCGAGAGTGTTGGAGAGAAGCATAGCAACAGTCA
TGGGTCCAACTCCTCCAGGCACAGGGGTAATGACCGACGCTAACCTCATT
GCTTCTTCATAGCAAACATCTCCCATTAGACGATAACCATATTCACAGCT
TGGATCCACGCTTACATCAACAGGACAAGTTCCAACATCAAGAACAACAG
CACCAGGCTTTAGCCAACTCCCACGAACCAGATTAGCTACTCCTGCAGCT
GCGATCACGATATCAGCCTCACTGGTGATCTGCTCGGGGTTTTTTGTTAA
GGCGTGTACAATACTGACGGTTGCATGGTGTCTCTGCAACAATAAAGATG
TGGGCAATCCAACAATATTGCTTCTACCAATCACCACAGCATTCTTGCCC
ATTATCTCGACCCCCGATCTGATCAATAACTCAATGCAACCTTTTGGCGT
ACATGGAATAAACAGTGGTTCCCTTCCTCTCATGGCGAGATTCCCTATAT
TTAG
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