CN182123
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: Y8823_DICDI (Probable farnesyl diphosphate synthase DDB_G0278823 OS=Dictyostelium discoideum GN=DDB_G0278823 PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31 Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 2 Query: 113 DLKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK------VGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLH 655 ++ F ++ +L E+ + +F +S W++ ++ N GGK+NRG+SV++S L EG+ LT E F + LGWC+E QA +LV DDIMD S RRG+PCW++ + VG+ A ND ++ + + +L+ +F+++ YY+++++LF++ FQT GQ++DL TT D S +L H Sbjct: 10 EVLEEFANLFPILLNEIKKELEKIDFPKESIHWIETVIKANSTGGKMNRGISVLESLESLNEGRALTRHEIFQAQTLGWCVEIFQACYLVSDDIMDQSLKRRGKPCWYKQKRPNSDQEVGLAAINDSFIIESCVFILLEKYFKNESYYLNIVELFHKTGFQTQLGQLLDL-TTQPIRGDFSSINLKNH 196
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: Y8742_DICDI (Probable farnesyl diphosphate synthase DDB_G0268742 OS=Dictyostelium discoideum GN=DDB_G0268742 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25 Identity = 66/182 (36.26%), Postives = 106/182 (58.24%), Query Frame = 2 Query: 119 KSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDY-NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSS------------ALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVP--------KVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMID 598 + FI+VY +LK ++ ++ P + ++ ++ +L+ + GGK+ RGL + S L K D+ ++ +GWC+E+L ++FL+ DDIMD TRRG+ CW+R P KVGM+A ND VL+ + + ILK +F++K YYVDL +LF+E F TA+GQ++D Sbjct: 13 REEFIKVYSILKNDVFDELPKMKLASNAIDYIKELLNSPTITGGKMYRGLGFLYSLNTLLIAKNNFDNNNNNNNNKNSETSQHEARIIGWCLEFL-SFFLITDDIMDNGLTRRGELCWYRHPSPFNPTEHKVGMLAINDSVLIESFLFFILKKYFKNKSYYVDLFELFHESIFYTATGQLLD 193
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: GGPPS_SCHPO (Geranylgeranyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=spo9 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23 Identity = 64/139 (46.04%), Postives = 83/139 (59.71%), Query Frame = 2 Query: 230 NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSL 646 N GGK NRGL+V+ S L +EL + EF ++ LGW IE LQ FL+ DDIMD S RRG CW+ V V A N+ LL I +++ +FR+ PYYVDLLD F EV F T GQ DL+++ + E L + L Sbjct: 50 NTLGGKNNRGLAVLQSLTSLIN-RELEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYLVVGVRR-AINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDL 186 The following BLAST results are available for this feature:
BLAST of CN182123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN182123 ID=CN182123; Name=CN182123; organism=Citrus sinensis; type=EST; length=658bpback to top |