CN182123

Overview
NameCN182123
Unique NameCN182123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: Y8823_DICDI (Probable farnesyl diphosphate synthase DDB_G0278823 OS=Dictyostelium discoideum GN=DDB_G0278823 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.001e-31
Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 2
Query:  113 DLKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPK------VGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSLPLH 655
            ++   F  ++ +L  E+  +    +F  +S  W++ ++  N  GGK+NRG+SV++S   L EG+ LT  E F +  LGWC+E  QA +LV DDIMD S  RRG+PCW++  +      VG+ A ND  ++ + +  +L+ +F+++ YY+++++LF++  FQT  GQ++DL TT     D S  +L  H
Sbjct:   10 EVLEEFANLFPILLNEIKKELEKIDFPKESIHWIETVIKANSTGGKMNRGISVLESLESLNEGRALTRHEIFQAQTLGWCVEIFQACYLVSDDIMDQSLKRRGKPCWYKQKRPNSDQEVGLAAINDSFIIESCVFILLEKYFKNESYYLNIVELFHKTGFQTQLGQLLDL-TTQPIRGDFSSINLKNH 196          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: Y8742_DICDI (Probable farnesyl diphosphate synthase DDB_G0268742 OS=Dictyostelium discoideum GN=DDB_G0268742 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.389e-25
Identity = 66/182 (36.26%), Postives = 106/182 (58.24%), Query Frame = 2
Query:  119 KSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDY-NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSS------------ALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVP--------KVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMID 598
            +  FI+VY +LK ++ ++ P  +   ++  ++  +L+   + GGK+ RGL  + S   L   K   D+    ++             +GWC+E+L ++FL+ DDIMD   TRRG+ CW+R P        KVGM+A ND VL+ + +  ILK +F++K YYVDL +LF+E  F TA+GQ++D
Sbjct:   13 REEFIKVYSILKNDVFDELPKMKLASNAIDYIKELLNSPTITGGKMYRGLGFLYSLNTLLIAKNNFDNNNNNNNNKNSETSQHEARIIGWCLEFL-SFFLITDDIMDNGLTRRGELCWYRHPSPFNPTEHKVGMLAINDSVLIESFLFFILKKYFKNKSYYVDLFELFHESIFYTATGQLLD 193          
BLAST of CN182123 vs. ExPASy Swiss-Prot
Match: GGPPS_SCHPO (Geranylgeranyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=spo9 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.920e-23
Identity = 64/139 (46.04%), Postives = 83/139 (59.71%), Query Frame = 2
Query:  230 NVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEAEKDLSKYSL 646
            N  GGK NRGL+V+ S   L   +EL + EF  ++ LGW IE LQ  FL+ DDIMD S  RRG  CW+ V  V   A N+  LL   I  +++ +FR+ PYYVDLLD F EV F T  GQ  DL+++ + E  L  + L
Sbjct:   50 NTLGGKNNRGLAVLQSLTSLIN-RELEEAEFRDAALLGWLIEILQGCFLMADDIMDQSIKRRGLDCWYLVVGVRR-AINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDL 186          
The following BLAST results are available for this feature:
BLAST of CN182123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
Y8823_DICDI1.001e-3136.17Probable farnesyl diphosphate synthase DDB_G027882... [more]
Y8742_DICDI2.389e-2536.26Probable farnesyl diphosphate synthase DDB_G026874... [more]
GGPPS_SCHPO2.920e-2346.04Geranylgeranyl pyrophosphate synthetase OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182123 ID=CN182123; Name=CN182123; organism=Citrus sinensis; type=EST; length=658bp
GCTCTCTCTCTCTCTCTTCTCTGTATTTTGCTTTCTTTCATTCTGTTTCT
CTCTTTTTTTTCTTACTTTTTTTTTGGTGGTGGGTCGCAAAAGCGGAAGG
TAAAAAATGAGTGATCTGAAGTCAAGATTCATTGAGGTGTATGGCGTTTT
GAAACAAGAGCTGCTGAATGATCCTGCATTTGAGTTCGATCACGATTCTC
GCCAATGGGTTGATCGTATGCTGGATTACAATGTACCTGGAGGAAAGCTG
AACCGAGGGCTATCTGTTGTTGACAGCTACAGGTTACTGAAAGAAGGAAA
AGAACTAACAGATGATGAATTCTTTCTCTCATCTGCACTAGGCTGGTGCA
TCGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATCATGGATGGC
TCTCATACACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCCCAAGGTTGG
TATGATTGCTGCAAATGATGGTGTCTTACTACGCAACCATATCTCCAGAA
TTCTCAAGAATCATTTTAGAGACAAGCCTTATTACGTGGACCTGTTGGAT
TTATTTAATGAGGTGGAATTTCAAACAGCTTCAGGACAAATGATAGACTT
AATTACCACAATCGAAGCAGAGAAAGATCTATCGAAGTACTCATTGCCAC
TTCATCGT
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