CN182101

Overview
NameCN182101
Unique NameCN182101
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_CANGA (Squalene monooxygenase OS=Candida glabrata GN=ERG1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  355 LANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYP 570
            +A  LA+ G++V ++ER+ S+PDRIVGEL+QPGG   L  LG+   +  IDA  V GY +F +G    I YP
Sbjct:   26 VATALARKGKKVLIVEREWSQPDRIVGELMQPGGLRALRSLGMIQSINNIDAYPVTGYTVFYNGEHVDIPYP 97          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_YEAST (Squalene monooxygenase OS=Saccharomyces cerevisiae GN=ERG1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 36/94 (38.30%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  289 LNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYP 570
            +N +     D I          +A  LA+ G++V ++ERD + PDRIVGEL+QPGG   L  LG+   +  I+A  V GY +F +G +  I YP
Sbjct:   11 INADNTITYDAIVIGAGVIGPCVATGLARKGKKVLIVERDWAMPDRIVGELMQPGGVRALRSLGMIQSINNIEAYPVTGYTVFFNGEQVDIPYP 104          
BLAST of CN182101 vs. ExPASy Swiss-Prot
Match: ERG1_ASHGO (Squalene monooxygenase OS=Ashbya gossypii GN=ERG1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 41/126 (32.54%), Postives = 60/126 (47.62%), Query Frame = 1
Query:  355 LANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYP-----------------------------LEKFHSDVA--GRGFHNGRFVQRLR 639
            +A  LA+ G++V ++ER+ S+PDRIVGEL+QP G   L  LG+   +  IDA    GY +  +G +   +YP                              ++F  D    G GF +GRF+Q LR
Sbjct:   34 VATALARKGKKVLIVEREWSQPDRIVGELMQPAGVRALRSLGMVQAINNIDACSTSGYTVIYNGEKISFAYPYKADLSPPEKIPDLVFDGNDKVVDDGTISAKEFEEDEREHGVGFVHGRFLQNLR 159          
The following BLAST results are available for this feature:
BLAST of CN182101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ERG1_CANGA1.766e-1247.22Squalene monooxygenase OS=Candida glabrata GN=ERG1... [more]
ERG1_YEAST8.767e-1238.30Squalene monooxygenase OS=Saccharomyces cerevisiae... [more]
ERG1_ASHGO7.422e-1132.54Squalene monooxygenase OS=Ashbya gossypii GN=ERG1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182101 ID=CN182101; Name=CN182101; organism=Citrus sinensis; type=EST; length=651bp
GGCTTAGCCAGCGAGGCAACAGAAACGGAAGAAAAAAACTAAAACAAAAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGACGTCGTCTGGTTTCGGTTTCG
GTTTCTGTCCGGACCGGTGGAAAAGAAAAGAAATGGCGGATCAGTACACG
TGGGGATTGATCTTGGGCGCTGTATTGGGGCTGGTGGCCGTTTATAACCT
GGGCCTTCTTGCTTTGTATAATCTTGTCATGAGGAGCAAGAGCGAGGACA
ACGGTGCAGATTCCTTACGCAAGACTCCAACTACGGCTCTAAATGGCGAA
TGCCCCTTCGATGCTGACGTCATCGTCGTCGGCGCCGGCGTCGCTGGCGC
TGCTCTCGCTAACACTCTTGCCAAGGATGGTCGTCGAGTGCATGTGATTG
AAAGGGATTTGTCGGAGCCTGACCGAATTGTTGGTGAATTGCTGCAACCC
GGGGGCTACCTCAAATTAATTGAGTTAGGACTTGAAGATTGTGTGGAGCA
AATTGATGCTCAGCGCGTTTTTGGTTATGCCCTTTTCAAGGATGGAAATA
GGACCCAAATATCTTATCCCTTGGAAAAGTTTCACTCAGATGTTGCAGGT
AGAGGATTTCACAATGGACGTTTCGTACAGAGGCTGCGGGAGAAAGCTGC
T
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