CN188880

Overview
NameCN188880
Unique NameCN188880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4A6_RABIT (Cytochrome P450 4A6 OS=Oryctolagus cuniculus GN=CYP4A6 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = -3
Query:  213 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGK----DCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCK 659
            E + +M Y    + EALRLYP VP   +++     FPDG ++ KG  V  +IYA+     +W      D   F P         ++  ++ F  F+GGPR C+GK FA  ++K A A  + R+ +          K  L +   +G+ + L K
Sbjct:  364 EHLDQMPYTTMCIKEALRLYPPVPGVGRQLSSPVTFPDGRSLPKGVIVTLSIYALHHNPKVWPNPEVFDPFPFAPG--------SARHSHAFLPFSGGPRNCIGKQFAMNELKVAVALTLVRFELLPDPKRVPDQKPRLVLKSSNGIHLRLRK 508          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4B1_MOUSE (Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 39/122 (31.97%), Postives = 65/122 (53.28%), Query Frame = -3
Query:  303 FKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRY 668
            F+ +++ +M YL   + E  RLYP VP  ++++ +   F DG ++  G+ +   IYA+ R  A+W  D   F P R+  +   T    + F  F+ GPR C+G+ FA  +MK   A  + R+
Sbjct:  355 FQWDDLAQMTYLTMCMKECFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISLHIYALHRNSAVW-PDPEVFDPLRFSPE-NMTGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRF 474          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4B1_HUMAN (Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 46/167 (27.54%), Postives = 84/167 (50.30%), Query Frame = -3
Query:  219 KMKESSSNSLVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDG-RYTSESAYK-----FTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNL 701
            +++E   +   F+ +++ KM YL   + E+ RLYP VP  ++++ +   F DG ++  G+ +   IYA+ R  A+W        P+  + D  R+++E+A K     F  F+ GPR C+G+ FA  +MK   A  + R+   +           L +  K+G  ++L
Sbjct:  344 EVREILGDQDFFQWDDLGKMTYLTMCIKESFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISMHIYALHRNSAVW--------PDPEVFDSLRFSTENASKRHPFAFMPFSAGPRNCIGQQFAMSEMKVVTAMCLLRFEFSLDPSRLPIKMPQLVLRSKNGFHLHL 502          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4AO_PIG (Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 43/149 (28.86%), Postives = 73/149 (48.99%), Query Frame = -3
Query:  213 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKVNLCK 659
            + + +M Y    + EALRLYP VP   +E+ +   FPDG ++  G  +  +IY +     +W  +  EF P R+      ++  ++ F  F+GG R C+GK FA  +MK A A  + R+ +             + +  K+G+ + L K
Sbjct:  358 DHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPITFPDGRSLPAGITLSLSIYGLHHNPQVW-PNPEEFDPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELAPDPSRKPIATPEVVLNSKNGIHLKLRK 502          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C71AI_ARATH (Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  282 KPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKG 665
            K +E++ M YL+A + E  R++P +P+    ++ +DV   G  +  GT+V+   +++ R  AIWG D  EFKPER L           K+  F  G R+C G + A   ++   A+++ R+   V  G
Sbjct:  340 KEKEVENMRYLKAVIKEVFRVHPPLPLILPRLLTEDVKVKGYDIAAGTEVLINAWSIHRDPAIWGPDAEEFKPERHLDSTLDYHGQDLKYIPFGSGRRICPGINLAMGLVEVTLANLVGRFDWSVDPG 467          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C4AD1_DROME (Probable cytochrome P450 4ad1 OS=Drosophila melanogaster GN=Cyp4ad1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 42/119 (35.29%), Postives = 64/119 (53.78%), Query Frame = -3
Query:  297 IKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRV 653
            + +M YL+  + E LRLYPSVP+  +    + +  +GT V K T VI  + AMG  E  +   C  F+PER+          A+K   F+ GPR C+ + FA YQMK   + ++ R+ +
Sbjct:  352 LDQMHYLELIIRETLRLYPSVPLIAR-TNRNPIDINGTKVAKCTTVIMCLIAMGYNEKYFDDPCT-FRPERFENPTGNVGIEAFKSVPFSAGPRRCIAEKFAMYQMKALLSQLLRRFEI 468          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C76C4_ARATH (Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CYP76C4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = -3
Query:  282 REDGKMKESSSNSLVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKG 713
            +   +M      + V +  +I  + YLQA + E  RL+P+ P+      E DV   G  V K T+V+  ++A+GR  ++W ++  +F+PER++          Y+ T F GG R+C G   A   +    AS++Y +  K+  G
Sbjct:  336 KAQAEMDRVLGQNSVVQESDISGLPYLQAVVKETFRLHPAAPLLVPRKAESDVEVLGFMVPKDTQVLVNVWAIGRDPSVW-ENPSQFEPERFMGKDIDVKGRDYELTPFGGGRRICPGLPLAVKTVSLMLASLLYSFDWKLPNG 478          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP132_MYCTU (Putative cytochrome P450 132 OS=Mycobacterium tuberculosis GN=cyp132 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 45/145 (31.03%), Postives = 75/145 (51.72%), Query Frame = -3
Query:  225 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKV 659
            +++ K+ +  A L E+ R + SV +  +E V+DD+  DG  +++GT V+  I+ +   +  W  D   F P R+LR        AY    F GG R+C+G+ FA  +M   AA +   +   +  G+ V  +  LT+  KHG+ V
Sbjct:  316 DDLGKLAWTTACLQESQRYFSSVWIIAREAVDDDII-DGHRIRRGTTVVIPIHHIHH-DPRWWPDPDRFDPGRFLRCPTDRPRCAY--LPFGGGRRICIGQSFALMEMVLMAAIMSQHFTFDLAPGYHVELEATLTLRPKHGVHV 456          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP132_MYCBO (Putative cytochrome P450 132 OS=Mycobacterium bovis GN=cyp132 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 45/145 (31.03%), Postives = 75/145 (51.72%), Query Frame = -3
Query:  225 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLALTMYMKHGLKV 659
            +++ K+ +  A L E+ R + SV +  +E V+DD+  DG  +++GT V+  I+ +   +  W  D   F P R+LR        AY    F GG R+C+G+ FA  +M   AA +   +   +  G+ V  +  LT+  KHG+ V
Sbjct:  316 DDLGKLAWTTACLQESQRYFSSVWIIAREAVDDDII-DGHRIRRGTTVVIPIHHIHH-DPRWWPDPDRFDPGRFLRCPTDRPRCAY--LPFGGGRRICIGQSFALMEMVLMAAIMSQHFTFDLAPGYHVELEATLTLRPKHGVHV 456          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C71AE_ARATH (Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=CYP71A14 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 40/132 (30.30%), Postives = 68/132 (51.52%), Query Frame = -3
Query:  279 LVFKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGH 674
            L    E+++ M YL+A + E LRL+P +P+     + +D+   G  +  GT+VI   +A+ R    WG D  EF+PER L        + ++F  F  G R+C G  FA   ++   A+++ R+  ++   H
Sbjct:  338 LYISEEDVEDMKYLKAVVKEVLRLHPPLPLLVPRELSEDIKLKGYDIAAGTQVIINAWAIQRDTMTWGIDAEEFRPERHLDSLVDFRGTNFEFIPFGSGRRICPGIGFAMALVEVTLANLVNRFNWRMEVQH 469          
The following BLAST results are available for this feature:
BLAST of CN188880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
CP4A6_RABIT1.232e-1230.07Cytochrome P450 4A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP4B1_MOUSE1.609e-1231.97Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1... [more]
CP4B1_HUMAN1.609e-1227.54Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1... [more]
CP4AO_PIG1.609e-1228.86Cytochrome P450 4A24 OS=Sus scrofa GN=CYP4A24 PE=2... [more]
C71AI_ARATH1.609e-1231.25Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=C... [more]
C4AD1_DROME1.609e-1235.29Probable cytochrome P450 4ad1 OS=Drosophila melano... [more]
C76C4_ARATH2.102e-1229.17Cytochrome P450 76C4 OS=Arabidopsis thaliana GN=CY... [more]
CP132_MYCTU2.745e-1231.03Putative cytochrome P450 132 OS=Mycobacterium tube... [more]
CP132_MYCBO2.745e-1231.03Putative cytochrome P450 132 OS=Mycobacterium bovi... [more]
C71AE_ARATH2.745e-1230.30Cytochrome P450 71A14 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188880 ID=CN188880; Name=CN188880; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTATTAAATACAACCCTTTATATTCCCATTTAAAT
TATGTTTCAATCAATTCCATGTATTTCTAACACATATATATTGCAATACC
AATAATAATAATATGGCTAAAAATTATGAAAAGCAAACATATTTTATTGA
CACAAAGTGAGCTCTCAATTTATCATTCACTTGAAGTATTTTTGCAGCTC
AGACTCATCTCGCTTGCATAGGTTCACCTTCAAGCCATGCTTCATGTACA
TTGTCAACGCAAGCTTTGGTGACACCGGATGACCCTTCACCACCTTAACA
CGGTAGCGGTAAATGATGGAGGCGGCAGCGTATTTCATCTGATAGTAGGC
GAAATCTTTGCCGAGGCAGAGCCTGGGGCCACCGTTGAAGGCAGTGAACT
TGTAGGCTGATTCACTCGTATAACGGCCGTCTCTTAGCCATCTTTCTGGC
TTGAATTCTCTACAATCCTTTCCCCATATTGCCTCCATTCTTCCCATTGC
ATAAATTGCATATATCACTTTTGTTCCCTTCTTTACAGCTGTCCCATCTG
GAAATACATCGTCTTCAACCACCTCTTTGTGATCAACAGGCACAGAGGGA
TACAACCTCAAAGCCTCTGATAATGCAGCTTGCAAATAATCCATTTTTTT
AATCTCCTCAGGCTTAAACACCAATGAATTACTGCTACTCTCCTTCATTT
TCCCGTCTTCTCTTTCAGCAATTA
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