CN188880

Overview
NameCN188880
Unique NameCN188880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4V2_PONAB (Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 47/155 (30.32%), Postives = 81/155 (52.26%), Query Frame = -3
Query:  198 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV-VKGHPVSPKLALTMYMKHGLKVNLCKRDESE 659
            E++KK+ YL+  + E LRL+PSVP+  + V ED     G  V KGT+ +   YA+ R +  +  +  EF+PER+  +        Y +  F+ GPR C+G+ FA  + K   + I+  + ++   K   +  +  L +   +G+ + L +RD  E
Sbjct:  373 EDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVA-GYRVLKGTEAVIIPYALHR-DPRYFPNPEEFQPERFFPENA-QGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRRDADE 524          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4F2_HUMAN (Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapiens GN=CYP4F2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 38/121 (31.40%), Postives = 63/121 (52.07%), Query Frame = -3
Query:  297 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRV 659
            +++  + +L   + E+LRL+P VPV  + V +D V PDG  + KG   + +++      A+W  D   + P R+  +      S   F  F+ GPR C+G+ FA  +MK   A  + R+RV
Sbjct:  373 DDLAHLPFLTMCMKESLRLHPPVPVISRHVTQDIVLPDGRVIPKGIICLISVFGTHHNPAVW-PDPEVYDPFRFDPE-NIKERSPLAFIPFSAGPRNCIGQTFAMAEMKVVLALTLLRFRV 491          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4C3_DROME (Cytochrome P450 4c3 OS=Drosophila melanogaster GN=Cyp4c3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 44/152 (28.95%), Postives = 80/152 (52.63%), Query Frame = -3
Query:  207 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKLA-LTMYMKHGLKVNLCKRD 659
            + +  M YL+  + ++LRL+PSVP+  + +V +DV   G  V  GT+ I   YA+ R   ++ K   +F P+ +L +        + +  F+ GPR C+G+ FA  + K   ++++ +Y+++ V        L  L +  K GL+V +  RD
Sbjct:  387 KNLMDMRYLECCIKDSLRLFPSVPMMAR-MVGEDVNIGGKIVPAGTQAIIMTYALHRNPRVFPKP-EQFNPDNFLPEN-CAGRHPFAYIPFSAGPRNCIGQKFAILEEKAVISTVLRKYKIEAVDRREDLTLLGELILRPKDGLRVKITPRD 535          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP132_DROME (Probable cytochrome P450 313a2 OS=Drosophila melanogaster GN=Cyp313a2 PE=3 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 37/121 (30.58%), Postives = 60/121 (49.59%), Query Frame = -3
Query:  294 EIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVK 656
            +++++ YL   L+E LRL PSVP   +E +ED    +G  + KG  +   I+   R    WG +  +F PE +L + +      Y F  F+ G R C+G  +     K A   I+  Y++K
Sbjct:  343 DLQQLVYLDRVLNETLRLMPSVPFSSRETLEDLRLSNGVVIPKGMTISIDIFNTQRNTDYWGSEAAQFNPENFLPE-KIHDRHPYAFIPFSKGKRNCIGWRYGLMSSKLALVKILRNYKLK 462          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: C13A3_CAEEL (Putative cytochrome P450 CYP13A3 OS=Caenorhabditis elegans GN=cyp-13A3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 35/122 (28.69%), Postives = 60/122 (49.18%), Query Frame = -3
Query:  294 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVK 659
            +++ K+ Y++  + E LRLYP   + H           G  +++GT V    + +      WG++  EFKPERW   G   + +   +  F  GPR+C+G   AY + K   A I+ +Y ++
Sbjct:  368 DQLSKLKYMECVIKETLRLYPLASIVHNRKCMKSTTVLGMKIEEGTNVQADTWTLHYDPKFWGENANEFKPERW-ESGDEQAVAKGAYLPFGLGPRICIGMRLAYMEEKMLLAQILKKYSLE 488          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4V3_MOUSE (Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 48/155 (30.97%), Postives = 80/155 (51.61%), Query Frame = -3
Query:  198 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKV-VKGHPVSPKLALTMYMKHGLKVNLCKRDESE 659
            E++KK+ YL   + E LR++PSVP+  + + E D    G  V KGT+ I   YA+ R +  +  D  EF+PER+  +        Y +  F+ GPR C+G+ FA  + K   A I+ ++ V+   K   +     L +   +G+ + L +R E +
Sbjct:  373 EDLKKLKYLDCVIKETLRVFPSVPLFARSLSE-DCEVGGYKVTKGTEAIIIPYALHR-DPRYFPDPEEFRPERFFPENS-QGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILACILRQFWVESNQKREELGLAGDLILRPNNGIWIKLKRRHEDD 524          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 38/122 (31.15%), Postives = 63/122 (51.64%), Query Frame = -3
Query:  303 FKPEEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRY 668
            F+ +++ KM YL   + E  RLYP VP  ++++ +   F DG ++  G+ +   IYA+ R   +W  D   F P R+  +        + F  F+ GPR C+G+ FA  +MK   A  + R+
Sbjct:  355 FQWDDLAKMTYLTMCMKECFRLYPPVPQVYRQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVW-PDPEVFDPLRFSPENA-AGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRF 474          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = -3
Query:  261 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVKVVKGHPVSPKL 659
            + + +M+YL   L+E LRLYP +    + V + DV   G  + KGT V+   + + R +++W +   EF+PER+ R  +  S + Y +  F  GPR C+G  FA   MK A   ++  +  K  K   +  KL
Sbjct:  348 DALVQMEYLDMVLNETLRLYP-IAGRLERVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLWPEP-EEFRPERFSRKNK-DSINPYTYLPFGTGPRNCIGMRFAIMNMKLALVRVLQNFSFKPCKETQIPLKL 477          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CP134_DROME (Probable cytochrome P450 313a4 OS=Drosophila melanogaster GN=Cyp313a4 PE=2 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 38/121 (31.40%), Postives = 60/121 (49.59%), Query Frame = -3
Query:  294 EIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRDGRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVK 656
            + ++M YL   L+E++R+ P VPV  ++  +D    +G  V KG ++   IY M R + IWG D   F P+ +L       +  Y +  F  G R C+G  +A    K   A ++  YR K
Sbjct:  345 DTQQMVYLDLILNESMRVIPPVPVVSRQTSQDLKLSNGIVVPKGVQIAIDIYHMHRSKKIWGPDAETFNPDHFL-PHNIQDKHPYAYIPFTKGIRNCIGWRYALISAKVTLAKLLRNYRFK 464          
BLAST of CN188880 vs. ExPASy Swiss-Prot
Match: CCD1P_DROME (Probable cytochrome P450 12d1 proximal, mitochondrial OS=Drosophila melanogaster GN=Cyp12d1-p PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = -3
Query:  294 EEIKKMDYLQAALSEALRLYPSVPVDHKEVVEDDVFPDGTAVKKGTKVIYAIYAMGRMEAIWGKDCREFKPERWLRD---GRYTSESAYKFTAFNGGPRLCLGKDFAYYQMKYAAASIIYRYRVK 659
            E +K M YL+A + E LR YP+  +      ++DV   G  V KGT V+     + + EA +     EF PERWLRD   G+    S + F  F  GPR+C+GK     +M+   A +I  + V+
Sbjct:  369 ENMKDMPYLRAVIKETLRYYPN-GLGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMK-EATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVE 491          
The following BLAST results are available for this feature:
BLAST of CN188880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
CP4V2_PONAB6.116e-1230.32Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2... [more]
CP4F2_HUMAN6.116e-1231.40Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapie... [more]
CP4C3_DROME6.116e-1228.95Cytochrome P450 4c3 OS=Drosophila melanogaster GN=... [more]
CP132_DROME6.116e-1230.58Probable cytochrome P450 313a2 OS=Drosophila melan... [more]
C13A3_CAEEL6.116e-1228.69Putative cytochrome P450 CYP13A3 OS=Caenorhabditis... [more]
CP4V3_MOUSE7.988e-1230.97Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1... [more]
CP4B1_RAT7.988e-1231.15Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP3AC_CANFA7.988e-1232.33Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP134_DROME7.988e-1231.40Probable cytochrome P450 313a4 OS=Drosophila melan... [more]
CCD1P_DROME7.988e-1235.20Probable cytochrome P450 12d1 proximal, mitochondr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188880 ID=CN188880; Name=CN188880; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTATTAAATACAACCCTTTATATTCCCATTTAAAT
TATGTTTCAATCAATTCCATGTATTTCTAACACATATATATTGCAATACC
AATAATAATAATATGGCTAAAAATTATGAAAAGCAAACATATTTTATTGA
CACAAAGTGAGCTCTCAATTTATCATTCACTTGAAGTATTTTTGCAGCTC
AGACTCATCTCGCTTGCATAGGTTCACCTTCAAGCCATGCTTCATGTACA
TTGTCAACGCAAGCTTTGGTGACACCGGATGACCCTTCACCACCTTAACA
CGGTAGCGGTAAATGATGGAGGCGGCAGCGTATTTCATCTGATAGTAGGC
GAAATCTTTGCCGAGGCAGAGCCTGGGGCCACCGTTGAAGGCAGTGAACT
TGTAGGCTGATTCACTCGTATAACGGCCGTCTCTTAGCCATCTTTCTGGC
TTGAATTCTCTACAATCCTTTCCCCATATTGCCTCCATTCTTCCCATTGC
ATAAATTGCATATATCACTTTTGTTCCCTTCTTTACAGCTGTCCCATCTG
GAAATACATCGTCTTCAACCACCTCTTTGTGATCAACAGGCACAGAGGGA
TACAACCTCAAAGCCTCTGATAATGCAGCTTGCAAATAATCCATTTTTTT
AATCTCCTCAGGCTTAAACACCAATGAATTACTGCTACTCTCCTTCATTT
TCCCGTCTTCTCTTTCAGCAATTA
back to top