CN182084

Overview
NameCN182084
Unique NameCN182084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BURM1 (Bifunctional protein folD OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=folD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 59/130 (45.38%), Postives = 77/130 (59.23%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +G  AVV+GRSNIVG P+++LLL+A ATVTI HS T D  +  R+ADI++AA G+  ++    +KPGA VIDVG N  DD+ K     L GDVDF    +                  MLL NTL+ A+R
Sbjct:  157 QGANAVVIGRSNIVGKPMAMLLLEAGATVTICHSKTRDLAAHTRQADIIVAAVGKRNILTADMVKPGATVIDVGMNR-DDAGK-----LCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLINTLESAER 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRASB (Bifunctional protein folD OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=folD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 55/128 (42.97%), Postives = 72/128 (56.25%), Query Frame = -2
Query:  157 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGA 540
            +G  A+V+GRSN+VG P+  LLL  +ATVTI HS + D  ++   AD+V AA G+  M+K  WIKPGA VIDVG N +  +  K+  RLVGDV + E  +                   LL NTL  A
Sbjct:  158 EGLNAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRDLAALTARADLVYAAVGRPEMVKRDWIKPGATVIDVGINRIPTAEGKT--RLVGDVAYAEVAEVAGAITPVPGGVGQMTVACLLVNTLRAA 283          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD2_HALMA (Bifunctional protein folD 2 OS=Haloarcula marismortui GN=folD2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 56/102 (54.90%), Postives = 66/102 (64.71%), Query Frame = -2
Query:  247 KGKRAVVVGRSNIVGLPVSLLLLK----ADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEA 540
            +GK  VVVGRS+IVG P++ LL++     +AT T+ HS T D     R ADIVIAAAG   MI GS +  G  VIDVG N VD  T+K GY LVGDVDF  A
Sbjct:  156 EGKDVVVVGRSDIVGKPMANLLIQYGPGGNATTTVCHSRTDDLADKTRNADIVIAAAGVPEMIDGSMLSAGTTVIDVGINRVDADTEK-GYELVGDVDFESA 256          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_NITHX (Bifunctional protein folD OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=folD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 57/131 (43.51%), Postives = 73/131 (55.73%), Query Frame = -2
Query:  157 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTN---AVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGA 540
            +G  A+V+GRSN+VG P+  LLL  +ATVTI HS + +   + R AD+V AA G+A M++G W+KPGA VIDVG     A D  T     RL+GDV F EA +                   LL NTL  A
Sbjct:  158 EGMDAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRNLPELCRRADLVYAAVGKAEMVRGDWLKPGATVIDVGITRRPAADGKT-----RLIGDVAFDEAMEVAGAVTPVPGGVGQMTVACLLVNTLRAA 283          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_GEOKA (Bifunctional protein folD OS=Geobacillus kaustophilus GN=folD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 57/130 (43.85%), Postives = 73/130 (56.15%), Query Frame = -2
Query:  148 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKRV 537
            GK  VVVGRSNIVG PV  L L+  ATVT  HS T D  +I R+ADI+I A G+A +I    IKPGA VIDVG N +++       +L GDVDF    +                  MLL NT++ A+++
Sbjct:  158 GKHVVVVGRSNIVGKPVGQLFLREHATVTYTHSKTPDLAAITRQADILIVAVGKARLIGPEHIKPGAVVIDVGVNRLENG------KLCGDVDFDAVKEVAGYITPVPGGVGPMTITMLLHNTIEAARQL 281          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BURPP (Bifunctional protein folD OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=folD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 60/130 (46.15%), Postives = 76/130 (58.46%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +G  AVV+GRSNIVG P++LLLL+A ATVTI HS T D  +  R AD+V+AA G   ++    +KPGAAVIDVG N  DD+ K     L GDVDF    +                  MLL NT++ A+R
Sbjct:  157 QGANAVVIGRSNIVGKPMALLLLEAGATVTICHSKTRDLAAHTRNADVVVAATGLRNILTAEMVKPGAAVIDVGMNR-DDAGK-----LCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVNTIEAAER 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BURA4 (Bifunctional protein folD OS=Burkholderia ambifaria (strain MC40-6) GN=folD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 59/130 (45.38%), Postives = 77/130 (59.23%), Query Frame = -2
Query:  151 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 540
            +G  AVV+GRSNIVG P+++LLL+A ATVTI HS T D  +  R+ADIV+AA G+  ++    +KPGA VIDVG N  DD+ K     L GDVDF    +                  MLL NT++ A+R
Sbjct:  157 QGANAVVIGRSNIVGKPMAMLLLEAGATVTICHSKTRDLAAHTRQADIVVAAVGKRNILTADMVKPGATVIDVGMNR-DDAGK-----LCGDVDFAGVKEIAGHITPVPGGVGPMTITMLLINTIEAAER 280          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_BRASO (Bifunctional protein folD OS=Bradyrhizobium sp. (strain ORS278) GN=folD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 55/128 (42.97%), Postives = 71/128 (55.47%), Query Frame = -2
Query:  157 KGKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGA 540
            +G  A+V+GRSN+VG P+  LLL  +ATVTI HS + D  ++   AD+V AA G+  M+K  WIKPGA VIDVG N +   T +   RLVGDV + E  +                   LL NTL  A
Sbjct:  158 EGMNAIVIGRSNLVGRPLVQLLLNENATVTIAHSRSRDLPALTARADLVYAAVGRPEMVKRDWIKPGATVIDVGINRI--PTPEGKTRLVGDVAYAEVAEVAGAITPVPGGVGQMTVACLLVNTLRAA 283          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_AZOSB (Bifunctional protein folD OS=Azoarcus sp. (strain BH72) GN=folD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 56/129 (43.41%), Postives = 71/129 (55.04%), Query Frame = -2
Query:  151 GKRAVVVGRSNIVGLPVSLLLLKADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHEACKXXXXXXXXXXXXXXXXXXMLLRNTLDGAKR 537
            G  AVV+GRSNIVG P+++LL  A ATVT+ HS T D       ADIV+AA G+   + G  +KPGA VIDVG N + D  +    +L GDVDF  A +                  MLL NT+  A+R
Sbjct:  158 GAEAVVIGRSNIVGKPMAMLLTNAGATVTVCHSRTRDLRFHTGRADIVVAAIGKPRFVTGDMLKPGATVIDVGINRITDGPEAG--KLCGDVDFASASEVAGLITPVPGGVGPMTITMLLENTVISAER 284          
BLAST of CN182084 vs. ExPASy Swiss-Prot
Match: FOLD_AKKM8 (Bifunctional protein folD OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=folD PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 47/98 (47.96%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  250 GKRAVVVGRSNIVGLPVSLLLL--KADATVTIVHSHTTDPESIVREADIVIAAAGQAMMIKGSWIKPGAAVIDVGTNAVDDSTKKSGYRLVGDVDFHE 537
            G  AVV+GRS IVG P++ LL+  +A+ATVT+ HS T +   + R ADI++AA G+   +   ++K GA V+DVG N V+D++ K GYR+VGDV + E
Sbjct:  157 GANAVVIGRSMIVGKPMAHLLMSKQANATVTVAHSRTKNLPELCRSADIIVAAIGRPAFVTADFVKDGAVVVDVGINRVEDASAKRGYRIVGDVAYDE 254          
The following BLAST results are available for this feature:
BLAST of CN182084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FOLD_BURM11.711e-1945.38Bifunctional protein folD OS=Burkholderia multivor... [more]
FOLD_BRASB1.711e-1942.97Bifunctional protein folD OS=Bradyrhizobium sp. (s... [more]
FOLD2_HALMA1.711e-1954.90Bifunctional protein folD 2 OS=Haloarcula marismor... [more]
FOLD_NITHX2.234e-1943.51Bifunctional protein folD OS=Nitrobacter hamburgen... [more]
FOLD_GEOKA2.234e-1943.85Bifunctional protein folD OS=Geobacillus kaustophi... [more]
FOLD_BURPP2.234e-1946.15Bifunctional protein folD OS=Burkholderia phytofir... [more]
FOLD_BURA42.234e-1945.38Bifunctional protein folD OS=Burkholderia ambifari... [more]
FOLD_BRASO2.234e-1942.97Bifunctional protein folD OS=Bradyrhizobium sp. (s... [more]
FOLD_AZOSB2.234e-1943.41Bifunctional protein folD OS=Azoarcus sp. (strain ... [more]
FOLD_AKKM82.234e-1947.96Bifunctional protein folD OS=Akkermansia muciniphi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001O22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001O22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182084 ID=CN182084; Name=CN182084; organism=Citrus sinensis; type=EST; length=541bp
AAACTCATGAACCATCTTCACATGTATTATAAATTATTAACCATGATAAA
TAAAAATGTTTTCAAACAAAACCAAAGGAGAATGAGTACCGTCTCATGAA
TTACAATGAAGTCAAGAACAAAGACGAGGGCGGTTTTACAGCTCGATCAC
ACGCTTTGCACCATCCAAGGTATTCCTGAGTAGCATAGCAACAGTCATTG
GGCCCACACCACCTGGAACAGGAGTTACACATCCAGCTACTTTACACGCT
TCATGGAAATCCACATCTCCCACTAACCTATAGCCTGACTTCTTGGTCGA
GTCATCGACAGCATTTGTTCCAACATCAATAACAGCGGCACCAGGCTTGA
TCCAACTTCCCTTGATCATCATTGCTTGGCCGGCTGCAGCAATAACAATG
TCAGCTTCACGAACGATACTTTCAGGATCAGTGGTATGTGAATGGACTAT
GGTTACAGTGGCATCAGCTTTCAGCAGCAGCAATGAAACTGGGAGTCCAA
CAATGTTACTTCGACCCACCACAACAGCCCTTTTACCCTTT
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