CN182025

Overview
NameCN182025
Unique NameCN182025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HECD2_PONAB (Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii GN=HECTD2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   24 ISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            + +   +E+E+L+ G P++D+  L+ +T+Y GY      +++FW+V   F  +   +LL F TG+ +VP+ G   L        F+I K   +   LP AHTCFNQL LP Y SK+ L+++L++ I   SEGFG
Sbjct:  649 LMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISN-SEGFG 774          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 50/134 (37.31%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   24 ISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFG 425
            + +   +E+E+L+ G P++D+  L+ +T+Y GY      +++FW+V   F  +   +LL F TG+ +VP+ G   L        F+I K   +   LP AHTCFNQL LP Y SK+ L+++L++ I   SEGFG
Sbjct:  649 LMLLRPEEVEILVCGSPDLDMHALQRSTQYDGYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL-------NFKISKNETSTNCLPVAHTCFNQLCLPPYKSKKDLKQKLIIGISN-SEGFG 774          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: UPL7_ARATH (E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 63/145 (43.45%), Postives = 81/145 (55.86%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISG-LPEIDLDDLRANTEYTG-YTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHK---------AYGAP--ERLPSAHTCFNQLDLPEYSSKEQLQERLLLAI 401
            L+    + +FN  E   L+SG   +ID+DDLR NT+YTG Y+ +S  ++ FWEV K F   +   LL+FVT  S+ PL GFK LQ       F IHK         A G    ERLPSA TC+N L LP Y     ++E+LL AI
Sbjct:  994 LISPAWLKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLLLKFVTSCSRAPLLGFKYLQ-----PTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLPTYKRASTMREKLLYAI 1133          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   24 ISIFNDKELELLISGLP-EIDLDDLRANTEYTG-YTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 428
            +++F++ E+++L+ G P  ID+DDLR +T Y G Y   S  +  FWEV + F +ED    ++FVT  ++ P+ GFKAL        F I        RLP+A TC N L LP YS+K+ L+++LL A+  +  GFGF
Sbjct:  898 LAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALM-----PSFCIRVNGEDETRLPTASTCVNLLKLPMYSTKQTLRDKLLTAV-RSGVGFGF 1028          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HUL4_ASHGO (Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii GN=HUL4 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   30 IFNDKELELLISGLPE--IDLDDLRANTEYTG-YTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 428
            +F  +ELE L+ G  E  +D+  LR+ T Y G +   S VVQWFWE+          +LL FVTG+ +VP  G   +        F+I +     +RLP +HTCFN++ L EY  KE L+ +L++A+ E S+G+GF
Sbjct:  711 LFGSEELEQLVCGSNEQSLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVTTIP-------FRISRIRSGADRLPLSHTCFNEICLHEYKDKETLRNKLIIALEE-SQGYGF 838          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: UBE3C_HUMAN (Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 5.237e-19
Identity = 58/141 (41.13%), Postives = 84/141 (59.57%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLP-EIDLDDLRANTEYTG-YTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGF 422
            +V  E + +F+ +E+++LISG    I L+DL++ T Y+G Y+A   V++ FW V + F  E+  +LL+FVT  S+ PL GFK L        F IH      ERLP+A TC N L LPE+  +  L+ +LL AI E + GF
Sbjct:  946 VVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAI-ECAAGF 1080          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: UBE3C_MOUSE (Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLP-EIDLDDLRANTEYTG-YTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGF 422
            +V  E + +F+ +E+++LISG    + L+DL++ T Y+G Y+A   V++ FW V + F  E+  +LL+FVT  S+ PL GFK L        F IH      ERLP+A TC N L LPE+  +  L+ +LL AI E + GF
Sbjct:  946 VVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELY-----PAFCIHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAI-ECAAGF 1080          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HUL4_YEAST (Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces cerevisiae GN=HUL4 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.599e-18
Identity = 55/139 (39.57%), Postives = 85/139 (61.15%), Query Frame = 3
Query:   24 ISIFNDKELELLISGLPE---IDLDDLRANTEYTG-YTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGFGF 428
            I +FN +ELE L+ G  E    D   LR+ T+Y G ++  S  V WFWE+ ++++     +LLQFVT + ++P  G   +     P K  +  ++ + + LP AHTCFN++ L  YSSK++L+ +LL AI+E SEG+GF
Sbjct:  760 IKLFNSEELERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTASDRIPATGISTI-----PFKISLLGSHDSDD-LPLAHTCFNEICLWNYSSKKKLELKLLWAINE-SEGYGF 891          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HERC2_MOUSE (Probable E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 49/136 (36.03%), Postives = 80/136 (58.82%), Query Frame = 3
Query:    6 LVPRELISIFNDKELELLISGLPEIDLDDLRANTEYTGYTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVP--LEGFKALQGISGPQKFQIHKAYGAPER-LPSAHTCFNQLDLPEYSSKEQLQERLLLAIH 404
            +VP  L+S+F   ELE ++ G P+I L  L++   Y G   ++++VQWFWEV ++F+  + +  L+FV G +++P  +  F+    +      Q+   Y  P+  LP ++TCF  L LP YS K+ L+E+L  AIH
Sbjct: 4658 VVPVPLLSLFTGYELETMVCGSPDIPLHLLKSVATYKGIEPSASLVQWFWEVMESFSNTERSLFLRFVWGRTRLPRTIADFRGRDFV-----IQVLDKYNPPDHFLPESYTCFFLLKLPRYSCKQVLEEKLKYAIH 4788          
BLAST of CN182025 vs. ExPASy Swiss-Prot
Match: HERC4_HUMAN (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 51/136 (37.50%), Postives = 76/136 (55.88%), Query Frame = 3
Query:   18 ELISIFNDKELELLISGLPEIDLDDLRANTEYTG-YTAASTVVQWFWEVAKAFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQKFQIHKAYGAPERLPSAHTCFNQLDLPEYSSKEQLQERLLLAIHEASEGF 422
            +++ +F   EL+ ++ G    D  +L  NTEY G Y A    ++ FWEV      E   + L F+TG+ ++P+ G K+L       K  I    G  E LP +HTCFN LDLP+Y+ KE L+ +L+ AI + +EGF
Sbjct:  927 KVLLLFQPNELQAMVIGNTNYDWKELEKNTEYKGEYWAEHPTIKIFWEVFHELPLEKKKQFLLFLTGSDRIPILGMKSL-------KLVIQSTGGGEEYLPVSHTCFNLLDLPKYTEKETLRSKLIQAI-DHNEGF 1054          
The following BLAST results are available for this feature:
BLAST of CN182025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
HECD2_PONAB1.247e-2037.31Probable E3 ubiquitin-protein ligase HECTD2 OS=Pon... [more]
HECD2_HUMAN1.247e-2037.31Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
UPL7_ARATH4.737e-2043.45E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis th... [more]
YFK7_SCHPO1.800e-1940.15Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]
HUL4_ASHGO1.800e-1938.97Probable E3 ubiquitin-protein ligase HUL4 OS=Ashby... [more]
UBE3C_HUMAN5.237e-1941.13Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UB... [more]
UBE3C_MOUSE6.840e-1940.43Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ub... [more]
HUL4_YEAST2.599e-1839.57Probable E3 ubiquitin-protein ligase HUL4 OS=Sacch... [more]
HERC2_MOUSE5.791e-1836.03Probable E3 ubiquitin-protein ligase HERC2 OS=Mus ... [more]
HERC4_HUMAN7.563e-1837.50Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182025 ID=CN182025; Name=CN182025; organism=Citrus sinensis; type=EST; length=629bp
GAGGATTGGTTCCGCGGGAACTTATTTCAATATTTAATGACAAAGAGCTA
GAGCTCCTAATCAGTGGGCTTCCTGAGATTGATTTGGATGACTTAAGGGC
CAATACCGAATACACTGGCTATACAGCAGCATCTACTGTTGTCCAGTGGT
TTTGGGAGGTTGCTAAAGCTTTCAACAAAGAAGACATGGCTAGACTGCTT
CAATTTGTCACTGGAACTTCAAAGGTTCCACTGGAGGGTTTCAAGGCATT
GCAGGGTATCTCTGGTCCCCAGAAGTTCCAGATTCACAAGGCATATGGAG
CCCCTGAGCGGCTGCCTTCGGCTCATACATGCTTCAATCAACTAGATCTT
CCTGAGTATTCGTCCAAGGAACAGCTTCAAGAGCGCTTGTTGCTTGCTAT
ACATGAAGCCAGTGAAGGTTTTGGCTTTGGTTAAATATTCTTTTACGTCA
GTGTTGCGCCAGCAGCACCAGCCGTCAGACTCCACATTTCCATGTACATA
AGCCAACTGATTCGGGTAGATAGAAATATCGATAAGTTGGGGGACAAGCC
GCAAATCATTGTCAAAATCAGATTGTAGAGGGATTCCTGGAAGTATCTCG
GCATAACCGCAATGGTAGTTATGCTTTGA
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