CN182021

Overview
NameCN182021
Unique NameCN182021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.265e-25
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+VL
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVL 71          

HSP 2 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:  232 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 345
            DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF1_ORYSJ (Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.046e-25
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = -1
Query:   37 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 228
            VT ENCQKS+IFFI+W+PDT+RVRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   75 VTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKSRA 138          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF_LILLO (Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.591e-25
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = -1
Query:   37 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 228
            VT ENCQKS+IFFI+WSPDT+RVRSKM+YAS+KDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   75 VTDENCQKSKIFFISWSPDTSRVRSKMLYASTKDRFKRELDGIQVELQATDPSEMSMDIIKARA 138          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF3_ARATH (Actin-depolymerizing factor 3 OS=Arabidopsis thaliana GN=ADF3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.591e-25
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = -1
Query:   34 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 228
            V++E   +SRIFF+AWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDP+EM LDVFK RAN
Sbjct:   75 VSSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFKSRAN 139          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF6_ORYSJ (Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = -1
Query:   37 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 228
            VT ENCQKS+IFFI+WSPDT++VRSKM+YASSKDRFKRELDGIQVELQATDPSEM +D+ K RA
Sbjct:   75 VTDENCQKSKIFFISWSPDTSKVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSMDIVKARA 138          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF8_ARATH (Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.124e-24
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = -1
Query:   34 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRAN 225
            T +NCQKS+IFFIAWSPDT+RVRSKM+YASSKDRFKRE++GIQVELQATDPSEM LD+ K R N
Sbjct:   76 TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDIIKGRLN 139          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.468e-24
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 1
Query:  346 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 558
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+VL
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVL 71          

HSP 2 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:  232 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 345
            DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF7_ARATH (Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.468e-24
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = -1
Query:   37 VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 228
            +T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:   73 ITDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 136          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF_BRANA (Actin-depolymerizing factor (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = -1
Query:   37 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 225
            T ENCQKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM  D+ K RA
Sbjct:   63 TNENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKSRA 125          
BLAST of CN182021 vs. ExPASy Swiss-Prot
Match: ADF12_ARATH (Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.271e-24
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = -1
Query:   37 TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 225
            TAEN QKS+IFFIAWSPD++RVR KM+YASSKDRFKRELDGIQVELQATDPSEM LD+ K RA
Sbjct:   74 TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIIKSRA 136          
The following BLAST results are available for this feature:
BLAST of CN182021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
UBIL_NPVOP2.265e-2578.87Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
ADF1_ORYSJ5.046e-2582.81Actin-depolymerizing factor 1 OS=Oryza sativa subs... [more]
ADF_LILLO6.591e-2582.81Actin-depolymerizing factor OS=Lilium longiflorum ... [more]
ADF3_ARATH6.591e-2584.62Actin-depolymerizing factor 3 OS=Arabidopsis thali... [more]
ADF6_ORYSJ8.608e-2582.81Actin-depolymerizing factor 6 OS=Oryza sativa subs... [more]
ADF8_ARATH1.124e-2481.25Actin-depolymerizing factor 8 OS=Arabidopsis thali... [more]
UBIL_NPVAC1.468e-2474.65Ubiquitin-like protein OS=Autographa californica n... [more]
ADF7_ARATH1.468e-2481.25Actin-depolymerizing factor 7 OS=Arabidopsis thali... [more]
ADF_BRANA3.271e-2482.54Actin-depolymerizing factor (Fragment) OS=Brassica... [more]
ADF12_ARATH3.271e-2484.13Actin-depolymerizing factor 12 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001N08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182021 ID=CN182021; Name=CN182021; organism=Citrus sinensis; type=EST; length=558bp
GAGGCAGCAATTGAGATCAGGAGCCTTTATTTAGTTGGCACGGTCTTTAA
ATACGTCAAGACCCATCTCAGATGGATCAGTTGCCTGCAGCTCCACTTGA
ATGCCATCTAGCTCTCTCTTGAACCTGTCCTTGGAGCTTGCATAAATCAT
CTTGCTTCTTACTCTTGCAGTGTCGGGAGACCATGCAATGAAGAAAATCC
TGCTTTTTTGGCAGTTCTCTGCGGTAACCCGGACCAGCAGCGGCTGATCT
TCGCCGGAAAGCAGCTCGAGGACGGGCGCACCTTGGCGGATTACAACATC
CAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGCGGCGGCATGCA
GATCTTCGTCAAGACTCTGACCGGGAAGACGATCACCCTGGAGGTGGAGA
GCTCCGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGG
ATCCCCCCGGACCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGA
CGGCCGCACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACC
TTGTGTTG
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