CN181983

Overview
NameCN181983
Unique NameCN181983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.038e-44
Identity = 89/190 (46.84%), Postives = 132/190 (69.47%), Query Frame = 1
Query:   10 NKLGQGGFGPVYKGKLANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQ-LLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            N LG+GG+G VY+GKL NG E+AVK+L    GQ  +EF+ EV  I  ++H+NLV+LLG C+E   +ML+YE++ + +L+ ++    R+   L W+ R  II G A+ + YLH+    +++HRD+KASNIL+D+E N ++S FG A++    E S  T RV+GT+GY++PEYA  GL + KSD++ FGVLL
Sbjct:  187 NVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGE-SHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLL 375          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: LRKA1_ARATH (Lectin-domain containing receptor kinase A4.1 OS=Arabidopsis thaliana GN=LECRKA4.1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.038e-44
Identity = 91/189 (48.15%), Postives = 127/189 (67.20%), Query Frame = 1
Query:   16 LGQGGFGPVYKGKLANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQ--LLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            +G GGFG V+KGKL N   IAVK++  +S QG+ EF  E+  + KL+H+NLV L G C  K++ +LIY+++PN SLD  ++   R+   +L W  RF I  GIA G+LYLH++    +IHRD+K SN+L+D +MNPR+  FG AR++    +S  T  +VGT GYM+PE +  G  S+ SDVF FGVLL
Sbjct:  373 IGTGGFGTVFKGKLPNSDPIAVKKIIPSSRQGVREFVAEIESLGKLRHKNLVNLQGWCKHKNDLLLIYDYIPNGSLDSLLYTVPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEKIVIHRDVKPSNVLIDSKMNPRLGDFGLARLYERGTLS-ETTALVGTIGYMAPELSRNGNPSSASDVFAFGVLL 560          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.152e-44
Identity = 92/195 (47.18%), Postives = 134/195 (68.72%), Query Frame = 1
Query:    4 ASNKLGQGGFGPVYKGKLANGQEIAVKRLST--TSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQL--LDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            + N LG GGFG VYKG+L +G +IAVKR+     +G+G  EFK+E+ ++ K++HR+LV LLG CL+ +EK+L+YE+MP  +L   +F+ S + L  L WK+R  + L +ARGV YLH  +    IHRDLK SNILL ++M  +++ FG  R+    + S  T R+ GT+GY++PEYA+ G  +TK DV+ FGV+L
Sbjct:  590 SDNILGSGGFGVVYKGELHDGTKIAVKRMENGVIAGKGFAEFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIET-RIAGTFGYLAPEYAVTGRVTTKVDVYSFGVIL 783          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.339e-43
Identity = 88/191 (46.07%), Postives = 130/191 (68.06%), Query Frame = 1
Query:   16 LGQGGFGPVYKGKLAN--GQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQ--LLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            +G GGFG V++G L++    +IAVK+++  S QG+ EF  E+  + +L+H+NLV L G C +K++ +LIY+++PN SLD  ++   R+   +L W  RF I  GIA G+LYLH++    +IHRD+K SN+L++++MNPR+  FG AR++      +NT  VVGT GYM+PE A  G  S+ SDVF FGVLL
Sbjct:  367 VGTGGFGTVFRGNLSSPSSDQIAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNGSLDSLLYSRPRQSGVVLSWNARFKIAKGIASGLLYLHEEWEKVVIHRDIKPSNVLIEDDMNPRLGDFGLARLY-ERGSQSNTTVVVGTIGYMAPELARNGKSSSASDVFAFGVLL 556          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 9.716e-43
Identity = 92/188 (48.94%), Postives = 124/188 (65.96%), Query Frame = 1
Query:   16 LGQGGFGPVYKGKLANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSL-DYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            +G+GGFG VY+G L +GQE+AVK  S+TS QG  EF NE+ L++ +QH NLV LLG C E D+++L+Y FM N SL D    + S++++LDW  R  I LG ARG+ YLH      +IHRD+K+SNILLD+ M  +++ FG ++    E  S  +  V GT GY+ PEY      S KSDVF FGV+L
Sbjct:  602 IGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVL 789          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.657e-42
Identity = 85/190 (44.74%), Postives = 129/190 (67.89%), Query Frame = 1
Query:    7 SNKLGQGGFGPVYKGKLANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            +N +G GG+G VYKG L NGQ IA+KR    S QG  EFK E+ L++++ H+N+VKLLG C ++ E+ML+YE++PN SL   +  ++  +L DW +R  I LG  +G+ YLH+ +   IIHRD+K++NILLDE +  +++ FG +++ G  E +  T +V GT GY+ PEY +    + KSDV+ FGV++
Sbjct:  637 ANDVGGGGYGQVYKGTLPNGQVIAIKRAQQGSMQGAFEFKTEIELLSRVHHKNVVKLLGFCFDQKEQMLVYEYIPNGSLRDGLSGKNGVKL-DWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVM 825          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.657e-42
Identity = 87/187 (46.52%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   16 LGQGGFGPVYKGKLANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            LGQGG G VYKG L +G+ +AVKR        +EEF NEV+++A++ HRN+VKLLGCCLE +  +L+YEF+PN  L   + DES    + W+ R  I + IA  + YLH  +   I HRD+K +NILLDE    ++S FGT+R    ++    T +V GT+GY+ PEY     F+ KSDV+ FGV+L
Sbjct:  422 LGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEVRLHIAIEIAGALSYLHSAASFPIYHRDIKTTNILLDERNRAKVSDFGTSRSVTIDQTHL-TTQVAGTFGYVDPEYFQSSKFTEKSDVYSFGVVL 607          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.164e-42
Identity = 89/188 (47.34%), Postives = 126/188 (67.02%), Query Frame = 1
Query:   16 LGQGGFGPVYKGKL-ANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFD-ESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVL 573
            LG+GGFG VYKG+L + GQ +AVK+L     QG  EF  EVL+++ L H NLV L+G C + D+++L+YEFMP  SL+  + D    K+ LDW  R  I  G A+G+ +LH  +   +I+RD K+SNILLDE  +P++S FG A++    + S  + RV+GTYGY +PEYA+ G  + KSDV+ FGV+
Sbjct:   92 LGEGGFGRVYKGRLDSTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEALDWNMRMKIAAGAAKGLEFLHDKANPPVIYRDFKSSNILLDEGFHPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVV 279          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: LRKA3_ARATH (Lectin-domain containing receptor kinase A4.3 OS=Arabidopsis thaliana GN=LECRKA4.3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.164e-42
Identity = 88/190 (46.32%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   16 LGQGGFGPVYKGKL-ANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQ--LLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            +G GGFG VY+G + ++  +IAVK+++  S QG+ EF  E+  + +L+H+NLV L G C  +++ +LIY+++PN SLD  ++ + R+   +L W  RF I  GIA G+LYLH++    +IHRD+K SN+L+D +MNPR+  FG AR++     S  T  VVGT GYM+PE A  G  S+ SDVF FGVLL
Sbjct:  369 VGTGGFGIVYRGNIRSSSDQIAVKKITPNSMQGVREFVAEIESLGRLRHKNLVNLQGWCKHRNDLLLIYDYIPNGSLDSLLYSKPRRSGAVLSWNARFQIAKGIASGLLYLHEEWEQIVIHRDVKPSNVLIDSDMNPRLGDFGLARLYERGSQSC-TTVVVGTIGYMAPELARNGNSSSASDVFAFGVLL 557          
BLAST of CN181983 vs. ExPASy Swiss-Prot
Match: WAKLA_ARATH (Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.692e-42
Identity = 85/187 (45.45%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   16 LGQGGFGPVYKGKLANGQEIAVKRLSTTSGQGIEEFKNEVLLIAKLQHRNLVKLLGCCLEKDEKMLIYEFMPNKSLDYFIFDESRKQLLDWKKRFDIILGIARGVLYLHQDSRLRIIHRDLKASNILLDEEMNPRISHFGTARVFGGEEISTNTNRVVGTYGYMSPEYALGGLFSTKSDVFQFGVLL 576
            LGQGG G VYKG L +G  +AVKR        +EEF NE++L++++ HRN+VKLLGCCLE +  +L+YE++PN  L   + DES    + W+ R  I + IA  + Y+H  +   I HRD+K +NILLDE+   ++S FGT+R    ++    T  V GT+GYM PEY L   ++ KSDV+ FGV+L
Sbjct:  435 LGQGGQGTVYKGMLVDGSIVAVKRSKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDYTMTWEVRLRIAIEIAGALTYMHSAASFPIFHRDIKTTNILLDEKYRAKVSDFGTSRSVTLDQTHL-TTLVAGTFGYMDPEYFLSSQYTHKSDVYSFGVVL 620          
The following BLAST results are available for this feature:
BLAST of CN181983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y2296_ARATH1.038e-4446.84Probable receptor-like protein kinase At2g42960 OS... [more]
LRKA1_ARATH1.038e-4448.15Lectin-domain containing receptor kinase A4.1 OS=A... [more]
TMK1_ARATH5.152e-4447.18Probable receptor protein kinase TMK1 OS=Arabidops... [more]
LRKA2_ARATH3.339e-4346.07Lectin-domain containing receptor kinase A4.2 OS=A... [more]
NORK_MEDTR9.716e-4348.94Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y5977_ARATH1.657e-4244.74Probable leucine-rich repeat receptor-like protein... [more]
WAKLB_ARATH1.657e-4246.52Wall-associated receptor kinase-like 2 OS=Arabidop... [more]
PBS1_ARATH2.164e-4247.34Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]
LRKA3_ARATH2.164e-4246.32Lectin-domain containing receptor kinase A4.3 OS=A... [more]
WAKLA_ARATH3.692e-4245.45Wall-associated receptor kinase-like 1 OS=Arabidop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001M07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181983 ID=CN181983; Name=CN181983; organism=Citrus sinensis; type=EST; length=578bp
GAGGCTTCTAATAAGCTTGGACAAGGGGGATTTGGTCCAGTTTACAAGGG
TAAGCTAGCGAATGGACAGGAGATAGCTGTCAAAAGGTTATCAACAACAT
CAGGACAAGGAATTGAGGAATTCAAAAATGAGGTCTTATTGATAGCAAAA
CTTCAACACAGAAATCTTGTAAAGCTCTTGGGTTGTTGTTTGGAAAAAGA
TGAAAAGATGTTAATCTATGAGTTCATGCCTAACAAAAGCTTGGACTACT
TTATTTTTGATGAATCAAGGAAGCAATTGTTGGATTGGAAAAAGCGCTTC
GATATAATTTTAGGGATAGCTCGAGGGGTCCTATATCTACATCAAGATTC
GAGGTTAAGAATTATCCATCGAGACTTGAAAGCTAGTAATATTCTTCTAG
ATGAAGAGATGAACCCTAGAATCTCACATTTTGGTACAGCTAGAGTATTT
GGAGGAGAGGAGATATCAACAAATACAAATAGGGTGGTTGGAACGTATGG
CTATATGTCACCAGAGTATGCACTGGGTGGCCTATTCTCTACGAAATCAG
ATGTCTTTCAGTTTGGAGTCCTATTATT
back to top