CN181917

Overview
NameCN181917
Unique NameCN181917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_GEOTN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=fabZ PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI QI+ I+PHR+PFLLVDR++E   G  AV IKNV+ N++FF GHFPE P+MPGVL+VEA+AQVG +V+LQ E    R   FFAGI
Sbjct:    1 MLDIQQIQAIIPHRYPFLLVDRILEIEEGKRAVGIKNVSANESFFAGHFPEYPVMPGVLIVEALAQVGAVVLLQSEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_GEOMG ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fabZ PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 51/72 (70.83%), Postives = 60/72 (83.33%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLV 628
            TV DIN+I  ILPHR+PFLLVDR++E+ PG   V IKNVTIN+ FF GHFP  PIMPGVL+VEAMAQVGG++
Sbjct:    3 TVFDINEIMKILPHRYPFLLVDRIVEHVPGERIVGIKNVTINEPFFQGHFPGHPIMPGVLIVEAMAQVGGIL 74          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_ACAM1 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Acaryochloris marina (strain MBIC 11017) GN=fabZ PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            T   I +I+++LPHR+PFLLVDR+I+Y     AV IKNVT+N+ FF GHFP RP+MPGVL+VEAMAQVGG+V+ Q     S + F F GI
Sbjct:   13 TTFMIEEIQELLPHRYPFLLVDRIIDYKESERAVGIKNVTMNEEFFQGHFPGRPLMPGVLIVEAMAQVGGIVLAQLPDIPSGKLFVFTGI 102          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPW ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH7803) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 55/90 (61.11%), Postives = 71/90 (78.89%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFFFAGI 682
            V++  QI  +LPHR+PF LVDRV+E+ PG  AVAIKNVT+N+  F GHFP+RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGI
Sbjct:    6 VLNAEQIMGLLPHRYPFALVDRVLEHVPGEKAVAIKNVTLNEPQFQGHFPDRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGI 93          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACCZ ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain ZK / E33L) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI QI++I+PHR+PFLLVD+V+E   G  A+ IKNVT N+ FF GHFP+ P+MPGVL+VEA+AQVG + ML+ E    R   FFAGI
Sbjct:    1 MLDIQQIKEIIPHRYPFLLVDKVLEVEEGKRAIGIKNVTANEEFFNGHFPDYPVMPGVLIVEALAQVGAVAMLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACC0 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus cereus (strain AH820) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI QI++I+PHR+PFLLVD+V+E   G  A+ IKNVT N+ FF GHFP+ P+MPGVL+VEA+AQVG + ML+ E    R   FFAGI
Sbjct:    1 MLDIQQIKEIIPHRYPFLLVDKVLEVEEGKRAIGIKNVTANEEFFNGHFPDYPVMPGVLIVEALAQVGAVAMLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACAN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus anthracis GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI QI++I+PHR+PFLLVD+V+E   G  A+ IKNVT N+ FF GHFP+ P+MPGVL+VEA+AQVG + ML+ E    R   FFAGI
Sbjct:    1 MLDIQQIKEIIPHRYPFLLVDKVLEVEEGKRAIGIKNVTANEEFFNGHFPDYPVMPGVLIVEALAQVGAVAMLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACAC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI QI++I+PHR+PFLLVD+V+E   G  A+ IKNVT N+ FF GHFP+ P+MPGVL+VEA+AQVG + ML+ E    R   FFAGI
Sbjct:    1 MLDIQQIKEIIPHRYPFLLVDKVLEVEEGKRAIGIKNVTANEEFFNGHFPDYPVMPGVLIVEALAQVGAVAMLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_BACAA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Bacillus anthracis (strain A0248) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 2
Query:  416 VMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFFFAGI 682
            ++DI QI++I+PHR+PFLLVD+V+E   G  A+ IKNVT N+ FF GHFP+ P+MPGVL+VEA+AQVG + ML+ E    R   FFAGI
Sbjct:    1 MLDIQQIKEIIPHRYPFLLVDKVLEVEEGKRAIGIKNVTANEEFFNGHFPDYPVMPGVLIVEALAQVGAVAMLKKEENRGR-LAFFAGI 88          
BLAST of CN181917 vs. ExPASy Swiss-Prot
Match: FABZ_THEEB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.141e-23
Identity = 48/75 (64.00%), Postives = 64/75 (85.33%), Query Frame = 2
Query:  413 TVMDINQIRDILPHRFPFLLVDRVIEYNPGVSAVAIKNVTINDNFFPGHFPERPIMPGVLMVEAMAQVGGLVMLQ 637
            TV+ + +++ +LPHR+PFLLVDR+I+Y P   AV +KNVTIN+ FF GHFP RPIMPGVL+VEA+AQVGG+V++Q
Sbjct:   11 TVLTVTELQQLLPHRYPFLLVDRIIDYVPEKYAVGLKNVTINEPFFQGHFPGRPIMPGVLIVEALAQVGGVVLMQ 85          
The following BLAST results are available for this feature:
BLAST of CN181917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_GEOTN8.265e-2460.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_GEOMG1.410e-2370.83(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ACAM11.410e-2358.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNPW2.405e-2361.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACCZ2.405e-2358.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACC02.405e-2358.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACAN2.405e-2358.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACAC2.405e-2358.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_BACAA2.405e-2358.43(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEEB3.141e-2364.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181917 ID=CN181917; Name=CN181917; organism=Citrus sinensis; type=EST; length=682bp
GAGGCCTACTAGTACCCATAGACTATCTCGTTAATGTCGCCGCCGACCAA
CTGTCATGGGTTTGATTTAAATGTCTATTCTTACATCTCTGCCTCATTTT
ATTAGTTAACTTATTACTCCTCAATTGAATCAATAGAATCCAATCTCTCA
GTTCTTCTCTCTTACAATGGCTACTGCCCCTGCTGCTTCCTTTGCCAATT
CACTTTTATCTCTCAATTCTCATCGACCAAATCCAAATGCCTCTTCTATT
TCAAAACCCAACACTCTCTCCATCCAATTCGACAAGAAGACGAATCAACA
ACAACAGCAGCACCAACGACATGCTCGTTTCACCACATTTTGTTCTTTGG
ACGCTGAACCCAAAGATTCCATCGAAGATAAACCCATCGAACTTCGGTAC
CAGGCATTTCCTACAGTGATGGACATTAACCAGATTCGTGACATTTTGCC
ACACAGGTTCCCATTTCTTTTGGTGGATAGAGTTATTGAATACAATCCAG
GAGTTTCAGCTGTTGCTATTAAGAATGTTACTATTAATGATAACTTCTTT
CCTGGCCATTTTCCTGAGAGGCCAATTATGCCCGGTGTTCTCATGGTTGA
GGCAATGGCACAGGTTGGTGGCTTGGTTATGCTGCAACCAGAAGTGGGAG
GCTCTCGTGAAAATTTCTTCTTTGCTGGAATT
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