CN181890

Overview
NameCN181890
Unique NameCN181890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 2.957e-44
Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQE-GDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAV V+ G    KGTV F QE  + P  V+G + GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSKTTGNAG R+ CG+IG+
Sbjct:    1 MVKAVCVINGD--AKGTVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGCGVIGI 149
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.862e-44
Identity = 86/149 (57.72%), Postives = 99/149 (66.44%), Query Frame = -2 
Query:  174 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KAV VL GT  V GTV F Q  DGP T+ GS++GL PG HGFHVHA GD TNGC+S GPH+NP  K HG P+DE RH            G A F + D Q+ LSG  SIIGR +VVH   DDLGKGG E S  TGNAG R+ACG+IG+
Sbjct:    1 MKAVCVLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKGGDEESLRTGNAGSRLACGVIGI 149
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_SCHMA (Superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni GN=SOD PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.044e-44
Identity = 87/150 (58.00%), Postives = 100/150 (66.67%), Query Frame = -2 
Query:  174 VKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KAV V+ GT GVKG V F+QE D GP  V    SGLK G HGFHVH  GDTTNGC S G HFNP  +EHG PED  RH            G A +   D  I L+G +SIIGR +V+H + DDLG+GGHELSK TGNAGGR+ACG+IGL
Sbjct:    1 MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRTMVIHENEDDLGRGGHELSKVTGNAGGRLACGVIGL 150
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.044e-44
Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.044e-44
Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.044e-44
Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.044e-44
Identity = 88/151 (58.28%), Postives = 101/151 (66.89%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            +VKAV V+ G    KGTV F QE  G P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                  + D++I L G +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSKITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 6.587e-44
Identity = 88/151 (58.28%), Postives = 102/151 (67.55%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 6.587e-44
Identity = 88/151 (58.28%), Postives = 102/151 (67.55%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            +VKAV V+ G    KGTV F QE  + P  VSG + GL  G HGFHVH  GD TNGCMS+GPHFNP GKEHG P DENRH                 ++ D++I L G +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VVKAVCVINGD--AKGTVFFEQESSETPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSRITLFGADSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGCGVIGI 150
[Close]
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.467e-43
Identity = 87/151 (57.62%), Postives = 100/151 (66.23%), Query Frame = -2 
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            + KAV V+ G    KGTV F QE    P  V G ++GL  G HGFHVH  GD TNGCMS+GPHFNP  KEHG P DENRH            G     + D++I L G NSI+GR VVVHADPDDLGKGGHELSK+TGNAG R+ CG+IG+
Sbjct:    2 VAKAVCVINGD--AKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGCGVIGI 150
The following BLAST results are available for this feature:
BLAST of CN181890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_DROPS2.957e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_PRIGL3.862e-4457.72Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_SCHMA5.044e-4458.00Superoxide dismutase [Cu-Zn] OS=Schistosoma manson... [more]
SODC_DROSI5.044e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE5.044e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME5.044e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]
SODC_DROMA5.044e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODC_DROYA6.587e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR6.587e-4458.28Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_CHYAM1.467e-4357.62Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181890 ID=CN181890; Name=CN181890; organism=Citrus sinensis; type=EST; length=651bp
AAAGATGGAGATTATACGAAAACCATTCAACATACACAACAAAGTTTTAG
ATTTCTCTTATTCAAGATCATAGTCTTGAAAAGTCACACTCAAGCATATA
TGGACTATAATGCACTCAAAACATCATATCAAATGAATTTATTATTGTCC
GATGAGATGCGGCTTCATCCTTGGAGGCCAATGATGCCGCAAGCTACTCT
GCCACCAGCATTTCCAGTGGTTTTGCTCAGCTCATGACCGCCCTTGCCAA
GATCATCGGGATCTGCGTGGACTACAACAGCCCTTCCAATAATGGAATTT
GGTCCAGAAAGAGGAATCTGATTGTCAACAACTGTAAAAGTAGCAGTACC
ATCATCACCAACATTGACATTTCCTAAGTCACCAGCATGACGATTCTCAT
CCTCTGGAGGTCCATGTTCTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTA
GACATGCAACCATTTGTTGTGTCTCCAAGAGCATGAACATGGAATCCATG
AGGACCAGGCTTGAGACCAGAGAGGCTTCCTGATACAGTTGTTGGACCAT
CTCCTTCCTGGGAAAAGGAAACAGTTCCCTTGACACCCTCAGTTCCACCA
AGAACTGCAACTGCTTTCACCATTTGTGCTGTGTGATCTCAGAACACCCC
T
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