CN181890

Overview
NameCN181890
Unique NameCN181890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = -2
Query:  174 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KAV V+ G   V+G + F Q+G GP  V+G ++GL  G HGFHVH  GD TNGC S G HFNP GK+HG P+D +RH            G A   + D+ I L+GP+ IIGR +VVHA  DDLG+GG   SK TGNAG R+ACG+IG+
Sbjct:    4 LKAVCVMKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHV-GDLGNVTAKGGVAEVEIEDSVISLTGPHCIIGRTMVVHAKSDDLGRGGDNESKLTGNAGPRLACGVIGI 151          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.421e-38
Identity = 83/150 (55.33%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  174 VAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 611
            +AVL G + V G + F QE +G PTT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P DE RH            GTA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAG RVACGI+ +
Sbjct:    6 IAVLRG-DNVSGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGARVACGIVAV 154          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.421e-38
Identity = 80/148 (54.05%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH            G A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSRLACGVIGI 150          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.421e-38
Identity = 83/152 (54.61%), Postives = 97/152 (63.82%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDGP-TTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAVL G  GV G V F QE D   TT+S +++G +P   HGFH+H  GD TNGC S+G HFNP  K HG PEDENRH            G A  +  D  I + GP SI+GR VVVHA  DDLG+GG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 78/149 (52.35%), Postives = 96/149 (64.43%), Query Frame = -2
Query:  174 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KAV VL G   V+GT+ F Q+G GP  VSG+++GL  G HGFHVH   D T GC S GPHFNP  K+HG P+D+ RH            G A  ++ D+ I LSG  SIIGR +VVH   DDLGKG +E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKGDNEESTQTGNAGSRLACGVIGI 151          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_MOUSE (Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 79/150 (52.67%), Postives = 95/150 (63.33%), Query Frame = -2
Query:  174 VKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KAV VL G   V+GT+ F Q+  G P  +SG ++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P DE RH            G A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGTIHFEQKASGEPVVLSGQITGLTEGQHGFHVHQYGDNTQGCTSAGPHFNPHSKKHGGPADEERHVGDLGNVTAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODE_BRUPA (Extracellular superoxide dismutase [Cu-Zn] OS=Brugia pahangi PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.166e-38
Identity = 82/151 (54.30%), Postives = 97/151 (64.24%), Query Frame = -2
Query:  174 AVAVLGGTEG-VKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 614
            A+AVL    G + GT+ F Q+ +  TT+SG + GL PG HGFHVH  GDTTNGC+S GPHFNP  K HG P DE RH            GTA   + D  + L GPNSIIGR++VVHAD DDLGKG     + S  TGNAGGRVACGI+ +
Sbjct:   48 AIAVLHSDNGNINGTIHFQQDKNS-TTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGDPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKGVGDKKDESLKTGNAGGRVACGIVAI 197          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 80/152 (52.63%), Postives = 98/152 (64.47%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAVL G+ GV G V+  Q  +  PTT++  ++G  P    GFH+H  GD TNGC+S GPHFNP  K HG P+DENRH            G A   + D+ + L GP S++GR+VVVHA  DDLGKGG+E S  TGNAG R ACG+IGL
Sbjct:    1 MVKAVAVLRGSAGVSGVVTLEQASEQDPTTITYEIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGL 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 78/150 (52.00%), Postives = 97/150 (64.67%), Query Frame = -2
Query:  174 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KAV VL G   V+G ++F Q E +GP  V G ++GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH            G A  ++ D+ I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 83/152 (54.61%), Postives = 96/152 (63.16%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAV+ G   V+GTV F QE +  PTT+S  + G  P    GFH+H  GD TNGC S GPHFNP GK+HG PED+ RH            G A  T  D  I L G +SI+GR +VVHA  DD GKGG E SKTTG+AG R ACG+IGL
Sbjct:    1 MVKAVAVVRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGFEDSKTTGHAGARPACGVIGL 152          
The following BLAST results are available for this feature:
BLAST of CN181890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_CHICK1.088e-3851.68Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC_BRUPA1.421e-3855.33Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]
SODC_BOVIN1.421e-3854.05Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_ASHGO1.421e-3854.61Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_CANFA1.856e-3852.35Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_MOUSE2.424e-3852.67Superoxide dismutase [Cu-Zn] OS=Mus musculus GN=So... [more]
SODE_BRUPA3.166e-3854.30Extracellular superoxide dismutase [Cu-Zn] OS=Brug... [more]
SODC_CANGA4.136e-3852.63Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_HYLLA5.401e-3852.00Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_CANAL5.401e-3854.61Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181890 ID=CN181890; Name=CN181890; organism=Citrus sinensis; type=EST; length=651bp
AAAGATGGAGATTATACGAAAACCATTCAACATACACAACAAAGTTTTAG
ATTTCTCTTATTCAAGATCATAGTCTTGAAAAGTCACACTCAAGCATATA
TGGACTATAATGCACTCAAAACATCATATCAAATGAATTTATTATTGTCC
GATGAGATGCGGCTTCATCCTTGGAGGCCAATGATGCCGCAAGCTACTCT
GCCACCAGCATTTCCAGTGGTTTTGCTCAGCTCATGACCGCCCTTGCCAA
GATCATCGGGATCTGCGTGGACTACAACAGCCCTTCCAATAATGGAATTT
GGTCCAGAAAGAGGAATCTGATTGTCAACAACTGTAAAAGTAGCAGTACC
ATCATCACCAACATTGACATTTCCTAAGTCACCAGCATGACGATTCTCAT
CCTCTGGAGGTCCATGTTCTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTA
GACATGCAACCATTTGTTGTGTCTCCAAGAGCATGAACATGGAATCCATG
AGGACCAGGCTTGAGACCAGAGAGGCTTCCTGATACAGTTGTTGGACCAT
CTCCTTCCTGGGAAAAGGAAACAGTTCCCTTGACACCCTCAGTTCCACCA
AGAACTGCAACTGCTTTCACCATTTGTGCTGTGTGATCTCAGAACACCCC
T
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