CN181890

Overview
NameCN181890
Unique NameCN181890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 82/152 (53.95%), Postives = 97/152 (63.82%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAV VL G   V GTV+F QE +  PTT++  L+G  P    GFH+H  GD TNGC S GPHFNP GK HG P D  RH            G A  ++ D+Q+ L GP+S+IGR VVVHA  DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDAKVGGTVTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 9.213e-38
Identity = 78/150 (52.00%), Postives = 94/150 (62.67%), Query Frame = -2
Query:  174 VKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            +KAV VL G   V+G + F Q+  G P  VSG ++GL  G HGFHVH  GD T GC + GPHFNP  K+HG P DE RH            G A  ++ D  I LSG +SIIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    3 MKAVCVLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.213e-38
Identity = 79/148 (53.38%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  174 AVAVLGGTEGVKGTVSFSQEG-DGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 614
            AV V+ G E V G V F+QE  D P TV+  ++GL+ G HGFHVHA GDTTNGC+S GPHFNP GK HG P DE+RH                 T+ D  I L G ++I+GR +VVHAD DDLGKGG   S TTG AG R+ CG+IG+
Sbjct:    5 AVCVIKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVHADQDDLGKGGKPDSLTTGAAGARLGCGVIGV 151          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_ONCVO (Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 82/151 (54.30%), Postives = 98/151 (64.90%), Query Frame = -2
Query:  174 AVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKG---GHELSKTTGNAGGRVACGIIGL 614
            A+AVL G + V G + F Q+ +G PTTV+G + GL PG HGFH+H  GDTTNGC+S GPHFNP  K HG   DE RH            GTA  ++ D  I L GPNSIIGR++VVHAD DDLGKG     + S  TGNAG RVACGI+ +
Sbjct:    5 AIAVLRG-DTVSGIIRFKQDKEGLPTTVTGEVKGLTPGLHGFHIHQYGDTTNGCISAGPHFNPYNKTHGDRTDEIRHVGDLGNIEAGADGTAHISISDQHIQLLGPNSIIGRSIVVHADQDDLGKGVGAKKDESLKTGNAGARVACGIVAI 154          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 79/148 (53.38%), Postives = 94/148 (63.51%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAV VL G   V+GT+ F  +GD    V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH            G A   +VD  I LSG  SIIGR +VVH  PDDLG+GG+E S  TGNAG  +ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 78/148 (52.70%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  174 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 617
            KAV VL G   V+GT+ F  +G     V+GS++GL  G HGFHVH  GD T GC S GPHFNP  K+HG P+DE RH            G A   +VD+ I LSG +SIIGR +VVH  PDDLG+GG+E S  TGNA  R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVDSLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 77/150 (51.33%), Postives = 94/150 (62.67%), Query Frame = -2
Query:  174 VKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 620
            + A+ V+ G +GV G ++F Q +   P  +SG +SGLK G HGFHVH  GDTTNGC+S G HFNP  KEHG P DENRH              +   + DN I L G NSIIGR++VVH   DDLG+G  + SK TGNAG R+ CGII L
Sbjct:    1 MSAICVIKG-DGVDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHDKEDDLGRGNSQDSKITGNAGSRLGCGIIAL 149          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 83/152 (54.61%), Postives = 94/152 (61.84%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAV+ G   VKGTV F QE +  PTT++  +SG  P    GFH+H  GD TNGC S GPHFNP G  HG    E RH            G A  TV DN + L GP S+IGR VVVHA  DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVVRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 80/152 (52.63%), Postives = 92/152 (60.53%), Query Frame = -2
Query:  174 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 623
            MVKAVAVL G   V G ++F+QE +G P TVSG +  L      GFHVH  GD TNGC S GPHFNP GK HG P D  RH            G A+  + D  + L GP SIIGR +VVHA  DD GKGG+  S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKGGNAESLKTGNAGARAACGVIGI 152          
BLAST of CN181890 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 79/152 (51.97%), Postives = 96/152 (63.16%), Query Frame = -2
Query:  171 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGS-LSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 623
            ++KAV VL G     GTV F QEG+      G  L GL PG HGFHVH  GD TNGC+S GPHFNPA K+H  P+DE+RH            G A   + D +I L+GP SIIGR +V+H   DDLG+GG+E S  TGNAG R+ACG+IG +
Sbjct:    2 VLKAVCVLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHEKADDLGRGGNEESLKTGNAGSRLACGVIGTE 152          
The following BLAST results are available for this feature:
BLAST of CN181890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PAETN7.054e-3853.95Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_RAT9.213e-3852.00Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC1_DICDI9.213e-3853.38Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_ONCVO1.203e-3754.30Superoxide dismutase [Cu-Zn] OS=Onchocerca volvulu... [more]
SODC_CAPHI1.203e-3753.38Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_CEREL1.571e-3752.70Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC5_DICDI1.571e-3751.33Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC_NEUCR2.052e-3754.61Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_CRYGA2.052e-3752.63Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC_XIPGL2.681e-3751.97Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001K03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181890 ID=CN181890; Name=CN181890; organism=Citrus sinensis; type=EST; length=651bp
AAAGATGGAGATTATACGAAAACCATTCAACATACACAACAAAGTTTTAG
ATTTCTCTTATTCAAGATCATAGTCTTGAAAAGTCACACTCAAGCATATA
TGGACTATAATGCACTCAAAACATCATATCAAATGAATTTATTATTGTCC
GATGAGATGCGGCTTCATCCTTGGAGGCCAATGATGCCGCAAGCTACTCT
GCCACCAGCATTTCCAGTGGTTTTGCTCAGCTCATGACCGCCCTTGCCAA
GATCATCGGGATCTGCGTGGACTACAACAGCCCTTCCAATAATGGAATTT
GGTCCAGAAAGAGGAATCTGATTGTCAACAACTGTAAAAGTAGCAGTACC
ATCATCACCAACATTGACATTTCCTAAGTCACCAGCATGACGATTCTCAT
CCTCTGGAGGTCCATGTTCTTTTCCAGCAGGGTTAAAGTGGGGTCCGGTA
GACATGCAACCATTTGTTGTGTCTCCAAGAGCATGAACATGGAATCCATG
AGGACCAGGCTTGAGACCAGAGAGGCTTCCTGATACAGTTGTTGGACCAT
CTCCTTCCTGGGAAAAGGAAACAGTTCCCTTGACACCCTCAGTTCCACCA
AGAACTGCAACTGCTTTCACCATTTGTGCTGTGTGATCTCAGAACACCCC
T
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