CN181874

Overview
NameCN181874
Unique NameCN181874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ2_MOUSE (Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = -2
Query:  287 FEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 706
            FEK VF KT    +RTE+EIA L G  IVYK   D+  +V G   ENEL+L +VL   FD++  +LR NV+K+                VDGG+ILE+D   +  KV   + D G  L+EQ+++Q L +A+E +  SLLK
Sbjct:   72 FEKNVFNKT----SRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSG--LTEQSVAQVLQSAKEQIKWSLLK 205          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ2_HUMAN (Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18
Identity = 59/140 (42.14%), Postives = 81/140 (57.86%), Query Frame = -2
Query:  287 FEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 706
            FEK VF KT    +RTE+EIA   G  IVYK   DL  +V G   ENEL+L +VL   F+++  +LR NV+K+               IVDGG+ILE+D   +  KV   + D G  L+EQ+++Q L +A+E +  SLLK
Sbjct:   77 FEKNVFNKT----SRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGG--LTEQSVAQVLQSAKEQIKWSLLK 210          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ_CAEEL (Probable coatomer subunit zeta OS=Caenorhabditis elegans GN=F59E10.3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.163e-15
Identity = 55/146 (37.67%), Postives = 80/146 (54.79%), Query Frame = -2
Query:  287 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA----LATAREHLTRSLLK 712
            +AFEK++F+KT +    T A+I +L+G   +Y+   DL+F+V G   ENEL L   L   +DAV ++LR NV+KK               I D GII+ETDA  +  + A  S +V    S+Q++SQ     + +A E    SLLK
Sbjct:   44 KAFEKSLFSKTSRN---TSADILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQRTALKSDEVS--FSDQSVSQIGFSFMKSANEQFKWSLLK 184          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZ_SCHPO (Probable coatomer subunit zeta OS=Schizosaccharomyces pombe GN=ret3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 44/146 (30.14%), Postives = 72/146 (49.32%), Query Frame = -2
Query:  287 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKV----ASHSVDVGAPLSEQTISQALATAREHLTRSLLK 712
            + FEK +F KT KT    + +I   +G ++V   V D+ F++ GG +ENE++L   L+   DA+ LL +   DK+                +D G+ILET+  +IA +V     S +  + +   E     +   ARE +T  +LK
Sbjct:   46 KTFEKGLFEKTWKT----QNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKAREKITERILK 187          
BLAST of CN181874 vs. ExPASy Swiss-Prot
Match: COPZA_DICDI (Probable coatomer subunit zeta-A OS=Dictyostelium discoideum GN=copza PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = -2
Query:  305 EAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKKEAXXXXXXXXXXXXXIVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHL 712
            +AFEK VF KT K N     EI +L+  ++VYK   ++  ++ G +++NE+ L  VL  F D +  L     ++KK               I+DGGII+E+D+ VIA +V   + D      +++I++A+ + +E L
Sbjct:   38 KAFEKKVFDKTSKVNFG--GEITLLDNYLVVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTLDEIIDGGIIMESDSAVIADRVGIKAPDNDD--LDESINKAVTSVKEQL 170          
The following BLAST results are available for this feature:
BLAST of CN181874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COPZ2_MOUSE3.861e-1942.14Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 P... [more]
COPZ2_HUMAN7.281e-1842.14Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 P... [more]
COPZ_CAEEL1.163e-1537.67Probable coatomer subunit zeta OS=Caenorhabditis e... [more]
COPZ_SCHPO3.870e-1130.14Probable coatomer subunit zeta OS=Schizosaccharomy... [more]
COPZA_DICDI3.870e-1132.12Probable coatomer subunit zeta-A OS=Dictyostelium ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001J18_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181874 ID=CN181874; Name=CN181874; organism=Citrus sinensis; type=EST; length=713bp
TTTTTTTTTTTTTTTCTCAAAACTAATTTTTGATACTTTAATCATCACCG
TCCTCTGTGTTTTCAATGATCAAACAATACAAGGTTTACACAAATAAAAT
CTTCAAATGCGAAAACGCCAGCACACCCCCGAGGGACAACACTTCTGACA
GCACAAATGGCAGCATCATCTACTAATATTAAGAAAGCAAAATTGGAGAT
GCTCATTAACCGGTAAATCATGTATGGTAAAAACTGAGAAAATACGAGAA
CTCTGCTCTCTCCTTTTTATTCTGGTGCAATCATCACTTAAGAAGGGATC
TTGTTAAATGTTCACGGGCAGTAGCCAATGCTTGACTAATTGTCTGCTCA
GACAAAGGAGCTCCAACATCCACACTATGGCTTGCAACCTTTCCAGCAAT
GACATTTGCATCAGTTTCCAGAATGATACCTCCATCAACAATTTCATCAA
GGCACAACAAGATAAGATCCAAGTTCTCAAGAGCCTCCTTCTTGTCCACA
TTGCCTCTAAGAAGAAGACCAACTGCATCAAAAAATCCCTGAAGAACCGT
GGCTAAGATCAGCTCATTTTCATCTTCACCCCCAGTGACAAAAAAGTGAA
GGTCTTGAACAAACTTGTAAACAATAACGTTGCCCTCAAGCATAGCTATC
TCCGCTTCGGTCCGTGCATTTGTTTTCTGGGTCTTGGTAAACACAGCTTT
CTCAAAAGCTTCC
back to top