CN181817

Overview
NameCN181817
Unique NameCN181817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = -3
Query:  334 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 513
            ILKIVKE+FDFRPGM+  NLDL RGGN R+LKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  333 ILKIVKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 391          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_CARPA (S-adenosylmethionine synthetase OS=Carica papaya GN=SAMS PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.969e-24
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = -3
Query:  355 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKP 513
            ILKIVKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKP
Sbjct:  333 ILKIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKP 385          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK4_ATRNU (S-adenosylmethionine synthetase 4 OS=Atriplex nummularia GN=SAMS4 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.796e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  337 ILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_ATRNU (S-adenosylmethionine synthetase 2 OS=Atriplex nummularia GN=SAMS2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.796e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  337 ILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_ATRNU (S-adenosylmethionine synthetase 1 OS=Atriplex nummularia GN=SAMS1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 7.796e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+ INLDL +GG+ R+LKTAAYGHFGRDD DFTWE VKPLKWEKPQA
Sbjct:  337 ILKIVKETFDFRPGMIAINLDLLKGGS-RYLKTAAYGHFGRDDADFTWETVKPLKWEKPQA 396          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.330e-23
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            ILK++KE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  335 ILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_DIACA (S-adenosylmethionine synthetase 2 OS=Dianthus caryophyllus GN=SAM2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.268e-23
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM+ I LDLK+GGN R+LKTAAYGHFGR+DPDFTWE  K LKWEKPQA
Sbjct:  337 ILKIVKENFDFRPGMIAIALDLKKGGN-RYLKTAAYGHFGREDPDFTWEAAKTLKWEKPQA 396          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_MEDFA (S-adenosylmethionine synthetase OS=Medicago falcata GN=SAMS PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            IL IVKE+FDFRPGM++INLDLKRGGN RFLKTAAYGHFGRDD DFTWEVVKPLK  K
Sbjct:  335 ILNIVKETFDFRPGMISINLDLKRGGNNRFLKTAAYGHFGRDDADFTWEVVKPLKGGK 392          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_HORVU (S-adenosylmethionine synthetase 1 OS=Hordeum vulgare GN=SAM1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.869e-23
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILK+VKE+FDFRPGM+TINLDLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  335 ILKLVKENFDFRPGMITINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.619e-23
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPG++TINL LKRGG  R+LKTAAYGHFGRDDPDFTWEVVKPL+ EKP A
Sbjct:  334 ILKIVKENFDFRPGLITINLGLKRGGY-RYLKTAAYGHFGRDDPDFTWEVVKPLELEKPAA 393          
The following BLAST results are available for this feature:
BLAST of CN181817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK_MESCR5.969e-2486.67S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK_CARPA5.969e-2494.34S-adenosylmethionine synthetase OS=Carica papaya G... [more]
METK4_ATRNU7.796e-2483.61S-adenosylmethionine synthetase 4 OS=Atriplex numm... [more]
METK2_ATRNU7.796e-2483.61S-adenosylmethionine synthetase 2 OS=Atriplex numm... [more]
METK1_ATRNU7.796e-2483.61S-adenosylmethionine synthetase 1 OS=Atriplex numm... [more]
METK1_PICSI1.330e-2382.76S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK2_DIACA2.268e-2381.97S-adenosylmethionine synthetase 2 OS=Dianthus cary... [more]
METK_MEDFA3.869e-2386.21S-adenosylmethionine synthetase OS=Medicago falcat... [more]
METK1_HORVU3.869e-2381.97S-adenosylmethionine synthetase 1 OS=Hordeum vulga... [more]
METK_MUSAC8.619e-2383.61S-adenosylmethionine synthetase OS=Musa acuminata ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181817 ID=CN181817; Name=CN181817; organism=Citrus sinensis; type=EST; length=515bp
TACAACTCGCTGCTGCCTTCATTCTACATTCCAAAAATAGTCGTAAGCAA
AAGGAAGAATTTTACTAATTCCAGGCACCAGTTGAGCAAAATTCTCAATC
GATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAAACCAAAA
AAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTAT
GAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGAT
AATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAG
GGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACT
TGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAG
TGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAG
ATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCA
CAATTTTGAGGATCT
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