CN181817

Overview
NameCN181817
Unique NameCN181817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK3_HORVU (S-adenosylmethionine synthetase 3 OS=Hordeum vulgare GN=SAM3 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.126e-22
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILK+VKE+FDFRPGM++INLDLK+GGN RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  335 ILKLVKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.126e-22
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = -3
Query:  349 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 513
            IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  333 ILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.470e-22
Identity = 47/55 (85.45%), Postives = 51/55 (92.73%), Query Frame = -3
Query:  349 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 513
            IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEV+KPLK
Sbjct:  333 ILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_TRIMO (S-adenosylmethionine synthetase 1 OS=Triticum monococcum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.920e-22
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILKIVKE+FDFRPGM++INLDLK+GGN RF+KTAAYGHFGR+D DFTWEVVKPLK++K  A
Sbjct:  335 ILKIVKENFDFRPGMISINLDLKKGGN-RFIKTAAYGHFGREDADFTWEVVKPLKFDKASA 394          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.587e-22
Identity = 48/61 (78.69%), Postives = 56/61 (91.80%), Query Frame = -3
Query:  331 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 513
            ILK+VKE+FDFRPGM++INLDLK+GG  RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  335 ILKLVKENFDFRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK_CAMSI (S-adenosylmethionine synthetase OS=Camellia sinensis GN=SAM PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.123e-21
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = -3
Query:  367 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 513
            ILKIVKESFDFRPGM+ INLDLKRGGN RFLKTAAYGHFGRDDPDFTWE
Sbjct:  333 ILKIVKESFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWE 381          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.067e-21
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = -3
Query:  340 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 513
            IL ++K++FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  333 ILALIKKNFDFRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.054e-20
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = -3
Query:  349 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 513
            IL ++KE+FDFRPGM+ INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  333 ILDLIKENFDFRPGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.066e-20
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = -3
Query:  349 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 513
            IL+++KE+FDFRPGM+ INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  333 ILELIKENFDFRPGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CN181817 vs. ExPASy Swiss-Prot
Match: METK1_ACTCH (S-adenosylmethionine synthetase 1 OS=Actinidia chinensis GN=SAM1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.066e-20
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = -3
Query:  349 ILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 513
            IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  333 ILALIKENFDFRPGMIAINLDLKRGGNLRYQKTAAYGHFGRDDPDFTWETVKILK 387          
The following BLAST results are available for this feature:
BLAST of CN181817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
METK3_HORVU1.126e-2280.33S-adenosylmethionine synthetase 3 OS=Hordeum vulga... [more]
METK3_ARATH1.126e-2287.27S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK4_BRAJU1.470e-2285.45S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK1_TRIMO1.920e-2280.33S-adenosylmethionine synthetase 1 OS=Triticum mono... [more]
METK2_HORVU5.587e-2278.69S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK_CAMSI2.123e-2193.88S-adenosylmethionine synthetase OS=Camellia sinens... [more]
METK1_VITVI8.067e-2177.59S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK3_VITVI1.054e-2081.82S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK4_POPTR3.066e-2078.18S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK1_ACTCH3.066e-2080.00S-adenosylmethionine synthetase 1 OS=Actinidia chi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001I09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181817 ID=CN181817; Name=CN181817; organism=Citrus sinensis; type=EST; length=515bp
TACAACTCGCTGCTGCCTTCATTCTACATTCCAAAAATAGTCGTAAGCAA
AAGGAAGAATTTTACTAATTCCAGGCACCAGTTGAGCAAAATTCTCAATC
GATATCACTACACAACAGTGGTGACATGGTACATTAAACCAAAACCAAAA
AAGAAGTGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTAT
GAGTTCTGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGAT
AATATTCAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAG
GGATAGTTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACT
TGAGGGGCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAG
TGTCCATAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAG
ATCCAAATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCA
CAATTTTGAGGATCT
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