CN181789

Overview
NameCN181789
Unique NameCN181789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_RAT (Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_PONAB (Histone H4 OS=Pongo abelii PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_PLADU (Histone H4 OS=Platynereis dumerilii PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_PIG (Histone H4 OS=Sus scrofa PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_ORENI (Histone H4 OS=Oreochromis niloticus PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_ONCMY (Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MYTTR (Histone H4 OS=Mytilus trossulus PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MYTGA (Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MYTED (Histone H4 OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MYTCH (Histone H4 OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CN181789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_RAT2.098e-3697.44Histone H4 OS=Rattus norvegicus GN=Hist1h4b PE=1 S... [more]
H4_PONAB2.098e-3697.44Histone H4 OS=Pongo abelii PE=3 SV=1[more]
H4_PLADU2.098e-3697.44Histone H4 OS=Platynereis dumerilii PE=1 SV=2[more]
H4_PIG2.098e-3697.44Histone H4 OS=Sus scrofa PE=1 SV=2[more]
H4_ORENI2.098e-3697.44Histone H4 OS=Oreochromis niloticus PE=3 SV=2[more]
H4_ONCMY2.098e-3697.44Histone H4 OS=Oncorhynchus mykiss PE=1 SV=2[more]
H4_MYTTR2.098e-3697.44Histone H4 OS=Mytilus trossulus PE=3 SV=3[more]
H4_MYTGA2.098e-3697.44Histone H4 OS=Mytilus galloprovincialis PE=3 SV=3[more]
H4_MYTED2.098e-3697.44Histone H4 OS=Mytilus edulis PE=3 SV=3[more]
H4_MYTCH2.098e-3697.44Histone H4 OS=Mytilus chilensis PE=3 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181789 ID=CN181789; Name=CN181789; organism=Citrus sinensis; type=EST; length=552bp
TTTTTTTTTTTTTTTTTCAAGAAAACAGTTCTATATTGCCTTCAATATAA
AGATAAGATTTAACTTGATAGAATTACAAAGCAGCAACCTAATAACAAAC
TACTAAGAGCCCCATCTACCAGATCAAGATCTAGAGTCAAGATCTATTAA
CATTTAATTCCAGAACCCTAAGACAATTAACCCCCAAATCCATAAAGAGT
CCTGCCCTGCCTCTTGAGAGCGTAAACGACGTCCATCGCGGTCACGGTCT
TTCTCCTGGCGTGCTCAGTGTAGGTCACGGCGTCACGGATGACGTTCTCC
AAGAATATCTTCAGGACGCCACGTGTCTCCTCGTAGATCAAGCCGCTGAT
ACGCTTGACTCCACCTCTACGAGCCAAACGCCGGATTGCCGGCTTTGTGA
TACCCTGAATGTTATCGCGAAGCACCTTACGGTGACGCTTGGCGCCTCCC
TTTCCCAATCCCTTGCCTCCCTTACCGCGCCCAGACATTTTAGCGAGGAA
CTTAAAAGACTTTCCGCTGTTCCTCGAAAGAGAATTTGGATAGAGAAATT
TG
back to top