CN181788

Overview
NameCN181788
Unique NameCN181788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 4.007e-65
Identity = 121/205 (59.02%), Postives = 161/205 (78.54%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNAS-LLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAA-----NSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            LVDLA V+VG++YE+V+TTYAGL+RYR+GD+L VTG++N+APQFRFV+R++VLLS++ DKTDEAEL + ++ AS  LL+    SV EYTS A T  IPGHYV++WELL +        ++   E L +CCL +EE+L++VYRQGRVAD SIGPLEIR+V+ GTFEE+MD A+SRG SI QYK P+CV+   ++ELL+ +VVS  F
Sbjct:  223 LVDLARVEVGREYEVVITTYAGLSRYRVGDVLRVTGFHNAAPQFRFVRRQSVLLSVELDKTDEAELHRAVERASSALLRPRGVSVAEYTSRACTERIPGHYVVYWELLTESPVGAGDGDTVDGETLGRCCLEMEEALSAVYRQGRVADGSIGPLEIRIVRPGTFEEVMDLAVSRGTSIGQYKVPQCVTVPSVVELLDSRVVSSQF 427          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.196e-58
Identity = 110/202 (54.46%), Postives = 147/202 (72.77%), Query Frame = 1
Query:   52 RLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWEL-LVKDAANSPSD-EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            +LV L  V+VG  YELVVTT++GL RYR+GD+L VTG+YN APQF+F+ R+NV+LSIDSDKT+E +L   +  A  +L+  N  ++EYTSY D +T+PGHYV+FWE+    D   +P D ++L  CC  VEESL+ VYR+ R  D SIGPLEIR+V+ G F+ LMD  +S G+SINQYK PRC+  +  L+LLN KV++  F
Sbjct:  381 KLVSLVDVKVGCYYELVVTTFSGLYRYRVGDVLQVTGFYNRAPQFKFICRRNVILSIDSDKTNEEDLHNSVTTAKKILENQNYLLLEYTSYTDISTVPGHYVLFWEIKSTHDERPAPLDAQLLESCCAAVEESLDYVYRRCRAHDRSIGPLEIRLVEAGAFDALMDLLVSHGSSINQYKTPRCIESSLALKLLNSKVIACFF 582          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 8.947e-57
Identity = 107/203 (52.71%), Postives = 150/203 (73.89%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVI--EYTSYADTTTIPGHYVIFWELLVKDAANSP--SDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            +V+L +V+VG+ YE+V+TT+ GL RYR+GDIL VTG++N APQFRFV+R+NV+LSID+DKT E +L   +  A L   +  +S++  EYTSYADT++IPGHYV+FWEL  + + + P   D+ +  CC  VE+ L+ VYR+ R  D SIGPLEIRVV  GTF+ LMD+ +S+G+S+NQYK PRCV     LE+L+ +V+ + F
Sbjct:  393 IVNLVNVEVGQYYEIVITTFTGLYRYRVGDILKVTGFHNKAPQFRFVQRRNVVLSIDTDKTSEEDLLNAVTQAKLNHLQHPSSLLLTEYTSYADTSSIPGHYVLFWELKPRHSNDPPKLDDKTMEDCCSEVEDCLDYVYRRCRNRDKSIGPLEIRVVSLGTFDSLMDFCVSQGSSLNQYKTPRCVKSGGALEILDSRVIGRFF 595          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.892e-56
Identity = 111/201 (55.22%), Postives = 146/201 (72.64%), Query Frame = 1
Query:   52 RLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCV-SFTPILELLNGKVVSKAF 651
            ++VDL +V++G+ YELVVTT+AGL RYRIGD+L V G+YN APQFRF+ R+NV+LSID DKT+E +L + I  A   L   NA + EYTSYADT+++PGHYV+FWE+           +++ +CC+ VEE L+ +YRQ R  + SIG LEIRVVK GTFE+LMD  IS+G S NQYK PRCV S +   +LLNG V++  F
Sbjct:  382 KVVDLVNVKLGRYYELVVTTFAGLYRYRIGDVLQVAGFYNGAPQFRFICRRNVVLSIDLDKTNEEDLHRSITLAKKKLGS-NAFLAEYTSYADTSSVPGHYVLFWEI-----QGHLEPKLMEECCVAVEEELDYIYRQCRTKERSIGALEIRVVKPGTFEKLMDLIISQGGSFNQYKTPRCVKSNSATFKLLNGHVMASFF 576          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.292e-55
Identity = 107/164 (65.24%), Postives = 131/164 (79.88%), Query Frame = 1
Query:   10 HDXXXXXXXXXXXXRLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANS-PSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPL 498
            HD             LV+LA+V+VGK+YELV+TTYAGL RYR+GDIL VTG++NSAPQF+F++RKNVLLS++SDKTDEAELQK ++NAS L  E     IEYTSYA+T TIPGHYVI+WELL +D +N+  S+EV+ +CCL +EESLNSVYRQ RVAD SIGPL
Sbjct:  376 HDGDGAAEASLDETSLVELANVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFKFIRRKNVLLSVESDKTDEAELQKAVENASRLFAEQGTRGIEYTSYAETKTIPGHYVIYWELLGRDQSNALMSEEVMAKCCLEMEESLNSVYRQSRVADKSIGPL 539          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.298e-39
Identity = 84/204 (41.18%), Postives = 127/204 (62.25%), Query Frame = 1
Query:   52 RLVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGI-DNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSD---EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGKVVSKAF 651
            ++VDL  V+VG+ YEL+VTT+AGL RYR+GD+  V+G+YN+ P F F  R +V+LSID +K  E +L   I +     L+     ++  T+YAD +T+PGHY++FWEL     +N   D     + +CCL VE+  + +YR+ R    SI  LEIR++ +G F+ LMD+ +SRG S +QYK P  +     + +L  +VV + F
Sbjct:  403 KVVDLVDVKVGRCYELIVTTFAGLYRYRVGDLFTVSGFYNATPLFHFSGRHDVILSIDYEKISEEDLLNAIAETDKFHLRPLGYMLVGSTAYADISTLPGHYILFWELTNTCDSNVAIDIDQTAMEKCCLAVEDHFDEMYRKIR-HRGSISALEIRILSHGAFDALMDFFVSRGTSASQYKTPTAIRSKEAMMVLEERVVGRFF 605          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.616e-37
Identity = 76/200 (38.00%), Postives = 129/200 (64.50%), Query Frame = 1
Query:   58 VDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCV--SFTPILELLNGKVVSKAF 651
            V L  V+VGK YE+V+T +AGL RYR+GD++ +  ++NS P+ +F+ R++++LSI+ DK  E +LQ  ++ AS  L+     V+++TS+ + ++ PG YVIFWEL     +   SDEVL+ C   ++ +       G     +IGPLE+R+++ GTF+E++D+ +S G +++Q+K PR V  S + +L++L+  V    F
Sbjct:  381 VGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYVIFWEL-----SGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYF 575          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.801e-34
Identity = 78/207 (37.68%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   58 VDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLL-----KEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESL--NSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCV--SFTPILELLNGKVVSKAF 651
            V L  V VG+ YE+V+TT+ GL RYR+GD++ V G++++ P+ RFV R++++LSI+ DK  E +LQ  +D+A+ +L           + +YTS+ADT++ PGHYV+FWEL            VL +CC  ++ +   ++ Y Q R    +IG LE+RV++ G F+E++ + ++ G+S  Q+K PRCV  S   +L +L    ++  F
Sbjct:  403 VGLTDVVVGEHYEVVMTTFTGLYRYRLGDVVKVAGFHHATPKLRFVCRRSLILSINVDKNSEHDLQLAVDSAAKILAGDGENHKQLEIADYTSHADTSSDPGHYVVFWEL--NGGGEEDGGGVLQRCCDEMDRAFGADAGYAQSR-KTCAIGALELRVLRRGAFQEVLRHYVAGGSSAGQFKMPRCVAPSNAGVLRVLKDNTINIFF 606          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH310_ORYSJ (Putative indole-3-acetic acid-amido synthetase GH3.10 OS=Oryza sativa subsp. japonica GN=GH3.10 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 64/101 (63.37%), Postives = 87/101 (86.14%), Query Frame = 1
Query:   55 LVDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNA-SLLLKEFNASVIEYTSYADTTTIPGHY 354
            LV+LA V+ G++YE+VVTTYAGLNRYR+GD+L VTG++N+APQFRFV+R++VLLSI++DKTDEAELQ+ ++ A S LL+   AS++EYTS A T  +PGH+
Sbjct:  367 LVELARVEDGREYEVVVTTYAGLNRYRVGDVLCVTGFHNAAPQFRFVRRQSVLLSIEADKTDEAELQRAVERASSALLRPRGASIVEYTSRACTERVPGHF 467          
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GH36_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.324e-19
Identity = 64/188 (34.04%), Postives = 96/188 (51.06%), Query Frame = 1
Query:   58 VDLAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLLLKEFNASVIEYTSY----------ADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPR 591
            VD+A V+ GK YELV TT+ GL RY++GD++ + G+++S+P+ +FV R         +   E ++   +D   L+LK+    VIE+ ++              TI        +LL     +  S   L +C   +E  L   YR  R A   + PLE+ VV+ GTF+ L + AI  GA  NQYK PR
Sbjct:  221 VDIAGVEAGKTYELVATTFRGLYRYKVGDVVKIAGFHHSSPRLQFVTRAPPPQE-HGEVLTERDVMAAMDTFQLMLKD-GGEVIEFAAFIIDGDGGQRRRRCATIAVEVSNGSKLL----DHERSAAFLRRCTAPLEGCLGGAYRLSR-ATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401          
The following BLAST results are available for this feature:
BLAST of CN181788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GH39_ORYSJ4.007e-6559.02Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH311_ORYSJ6.196e-5854.46Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH8.947e-5752.71Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH39_ARATH9.892e-5655.22Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ARATH1.292e-5565.24Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]
GH37_ORYSJ1.298e-3941.18Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH35_ORYSJ4.616e-3738.00Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ2.801e-3437.68Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH310_ORYSJ2.219e-3163.37Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ORYSJ3.324e-1934.04Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181788 ID=CN181788; Name=CN181788; organism=Citrus sinensis; type=EST; length=651bp
GTCTTGCCTCACGACCCAAATTATCCTCCTCTCTCTCCTGAATCACCTCC
ACGCCTTGTTGATCTCGCCCACGTCCAAGTTGGCAAACAGTATGAGCTTG
TGGTCACAACCTACGCTGGCCTGAACCGTTACCGAATTGGTGACATCCTC
CTTGTCACCGGATACTACAACTCGGCTCCCCAATTTCGTTTTGTCAAAAG
AAAGAATGTTTTGTTGAGCATTGACTCAGACAAAACCGACGAGGCTGAAC
TGCAAAAGGGCATTGATAATGCTTCCTTGCTGTTGAAGGAATTCAACGCC
AGCGTCATTGAGTACACAAGTTATGCTGACACAACGACAATTCCAGGACA
TTATGTGATATTCTGGGAGTTGCTTGTTAAAGATGCAGCCAATTCACCAA
GTGATGAGGTGCTGAATCAATGTTGCCTGGTAGTGGAAGAGTCGCTGAAC
TCGGTGTATCGACAAGGCCGAGTTGCTGATAATTCAATTGGACCACTAGA
GATAAGGGTGGTGAAAAATGGGACATTTGAGGAGCTAATGGACTATGCCA
TTTCAAGGGGCGCGTCAATTAATCAGTACAAAGCGCCAAGGTGTGTTAGT
TTCACTCCCATTCTGGAACTGCTTAATGGTAAGGTGGTCTCAAAAGCATT
T
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