CN181779

Overview
NameCN181779
Unique NameCN181779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATB3_GIALA (Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.258e-28
Identity = 59/122 (48.36%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  315 CVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 680
            C  KC   + L    K      Y +  D   IM  +   GP++ +FTVY DF +Y+SGVY+H  G V GGHAV ++G+GT DDG DYWI+ N W   WG DGYF+I R +NECGIEE V+ G
Sbjct:  176 CPTKCADGSDLPHLYKATKAVDYGL--DAPAIMKALATGGPLQTAFTVYSDFMYYESGVYQHTYGRVEGGHAVDMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRIIRMTNECGIEEQVIGG 295          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.789e-25
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = -3
Query:  315 CVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAG 680
            C  KC   +     +   S   Y +  D   +M  +  +GP++V+F V+ DF +Y+SGVY+H  G + GGHAV+++G+GT DDG DYWI+ N W   WG DGYF++ RG N+C IEE   AG
Sbjct:  177 CPTKCADGSSKVHLATATSYKDYGL--DIPAMMKALSTSGPLQVAFLVHSDFMYYESGVYQHTYGYMEGGHAVEMVGYGTDDDGVDYWIIKNSWGPDWGEDGYFRMIRGINDCSIEEQAYAG 296          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: TINAG_HUMAN (Tubulointerstitial nephritis antigen OS=Homo sapiens GN=TINAG PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 56/138 (40.58%), Postives = 79/138 (57.25%), Query Frame = -3
Query:  318 YLTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGD--------VMGGHAVKLIGWGT----SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 695
            + T  C     K N++++ S       YR++S+  +IM EI +NGPV+    V EDF HYK+G+Y+H+T           +  HAVKL GWGT        E +WI AN W +SWG +GYF+I RG NE  IE+ ++A
Sbjct:  333 HATKPCPNNVEKSNRIYQCSP-----PYRVSSNETEIMKEIMQNGPVQAIMQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIA 465          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: TINAG_BOVIN (Tubulointerstitial nephritis antigen OS=Bos taurus GN=TINAG PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.873e-23
Identity = 60/154 (38.96%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  270 YLTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGD--------VMGGHAVKLIGWGT----SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSKNLVKEITSAD 695
            + T  C     K N++++ S       YR++S+  +IM EI +NGPV+    V+EDF +YK+G+Y+HIT              HAVKL GWGT        E +WI AN W +SWG +GYF+I RG NE  IE+ ++A          ++TSAD
Sbjct:  333 HATTPCPNSIEKSNRIYQCSP-----PYRVSSNETEIMREIMQNGPVQAIMQVHEDFFNYKTGIYRHITSTNEDSEKYRKFRTHAVKLTGWGTLRGAQGQKEKFWIAANSWGKSWGENGYFRILRGVNESDIEKLIIAAW-------GQLTSAD 474          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATB1_GIALA (Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  318 IMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVA 587
            IM  +   GP++    VY D ++Y+SGVYKH  G + +G HA++++G+GT+DDG DYWI+ N W   WG +GYF+I RG NEC IE+++ A
Sbjct:  209 IMGMLVAGGPLQTMIVVYADLSYYESGVYKHTYGTINLGFHALEIVGYGTTDDGTDYWIIKNSWGPDWGENGYFRIVRGVNECRIEDEIYA 299          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATC_PONAB (Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 53/133 (39.85%), Postives = 76/133 (57.14%), Query Frame = -3
Query:  300 CVKKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 668
            C  K   +R  +S+++ +  +    +   +  E+  +GP+ V+F VY+DF HYK G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  331 CKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGEDGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATC_MACFA (Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=CTSC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.561e-21
Identity = 53/133 (39.85%), Postives = 78/133 (58.65%), Query Frame = -3
Query:  300 CVKKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 668
            C  K   +R  +S+++ +  +    +   +  E+  +GP+ V+F VY+DF HY++G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W  SWG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  331 CKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVYHGPLAVAFEVYDDFLHYQNGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTSWGEDGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATC_CANFA (Dipeptidyl-peptidase 1 (Fragment) OS=Canis familiaris GN=CTSC PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.780e-21
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = -3
Query:  300 KKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 662
            K N  +R  +S++Y +  +    +   +  E+ ++GP+ V+F VY+DF HY+ G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG DGYF+I+RG++EC IE   VA  P  K
Sbjct:  305 KPNDCFRYYSSEYYYVGGFYGACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGSRWGEDGYFRIRRGTDECAIESIAVAATPIPK 434          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATC_HUMAN (Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.733e-20
Identity = 52/133 (39.10%), Postives = 76/133 (57.14%), Query Frame = -3
Query:  300 CVKKNQLWR--NSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKHITG-------DVMGGHAVKLIGWGT-SDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEEDVVAGLPSSK 668
            C  K   +R  +S+++ +  +    +   +  E+  +GP+ V+F VY+DF HYK G+Y H TG         +  HAV L+G+GT S  G DYWI+ N W   WG +GYF+I+RG++EC IE   VA  P  K
Sbjct:  331 CKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH-TGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 462          
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: YCF2E_CAEEL (Uncharacterized peptidase C1-like protein F26E4.3 OS=Caenorhabditis elegans GN=F26E4.3 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.123e-19
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  321 YRINSDPEDIMAEIYKNGPVEVSFTVYEDFAHYKSGVYKH--------ITGDVMGGHAVKLIGWGTSDDGED---YWILANQWNRSWGADGYFKIKRGSNECGIEEDVV 614
            Y+++S  EDI  E+  NGPV+ +F V+EDF  Y  GVY+H         +    G H+V+++GWG          YW+ AN W   WG DGYFK+ RG N C IE  V+
Sbjct:  318 YKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHCEIESFVI 426          
The following BLAST results are available for this feature:
BLAST of CN181779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CATB3_GIALA2.258e-2848.36Cathepsin B-like CP3 OS=Giardia lamblia GN=CP3 PE=... [more]
CATB2_GIALA1.789e-2543.44Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
TINAG_HUMAN2.187e-2340.58Tubulointerstitial nephritis antigen OS=Homo sapie... [more]
TINAG_BOVIN4.873e-2338.96Tubulointerstitial nephritis antigen OS=Bos taurus... [more]
CATB1_GIALA8.312e-2348.35Cathepsin B-like CP1 OS=Giardia lamblia GN=CP1 PE=... [more]
CATC_PONAB4.561e-2139.85Dipeptidyl-peptidase 1 OS=Pongo abelii GN=CTSC PE=... [more]
CATC_MACFA4.561e-2139.85Dipeptidyl-peptidase 1 OS=Macaca fascicularis GN=C... [more]
CATC_CANFA7.780e-2140.46Dipeptidyl-peptidase 1 (Fragment) OS=Canis familia... [more]
CATC_HUMAN1.733e-2039.10Dipeptidyl-peptidase 1 OS=Homo sapiens GN=CTSC PE=... [more]
YCF2E_CAEEL1.123e-1941.28Uncharacterized peptidase C1-like protein F26E4.3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181779 ID=CN181779; Name=CN181779; organism=Citrus sinensis; type=EST; length=754bp
CCCTTTTTTAGCAGACGGAGCATGATGTGACATTTTTCATCTAAACGAAT
AATTCGGCGAGGAGAAACGAAGTTATTACAACTGGTTCTATTTTTACACA
CAACATTAAACTCCATTAATACATTCAATTATGCAAGACGGGAGCTTCCC
ATTTCATGCCTTGATAGCTTAGGTTCAACGATACACCCCTATAGCTACAC
ATTTGATATATAAATAACAACATGAAGGTATAGCAAAGTCTGCTCTCAAG
CTGAAGCATCCTCAAACATATCTGCACTTGTAATCTCTTTGACAAGATTT
TTGGATGAAGGCAAACCAGCAACCACATCCTCTTCAATACCACACTCATT
TGATCCTCTTTTAATCTTGAAGTAACCATCCGCACCCCAGCTTCTATTCC
ACTGATTAGCGAGAATCCAGTAATCCTCGCCATCATCACTAGTTCCCCAA
CCAATAAGCTTAACAGCATGACCCCCCATTACATCGCCTGTGATGTGTTT
GTAGACCCCAGATTTGTAGTGAGCAAAATCCTCATAAACTGTGAAGGAAA
CTTCAACTGGTCCATTCTTGTAAATTTCTGCCATTATGTCCTCTGGATCA
GAATTGATTCTATATGCACTAATACTGTAGTGCTTTGAATTCCTCCAAAG
CTGGTTTTTCTTGACGCACTTCCTCACACACTTTGGAGTAAGATATGCCG
GCTCACAACCAGGGGTGGGAACAGCCCAGTACTATCAAAGTAGGGATCAC
ACTC
back to top