CN181770

Overview
NameCN181770
Unique NameCN181770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.259e-87
Identity = 158/187 (84.49%), Postives = 170/187 (90.91%), Query Frame = 3
Query:   96 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+ GIK+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.259e-87
Identity = 158/187 (84.49%), Postives = 170/187 (90.91%), Query Frame = 3
Query:   96 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+ GIK+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 2.804e-87
Identity = 157/187 (83.96%), Postives = 170/187 (90.91%), Query Frame = 3
Query:   96 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT+GVEFGARMITID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL +WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ+GVFD++NE+ GIK+
Sbjct:    1 MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.289e-86
Identity = 157/187 (83.96%), Postives = 167/187 (89.30%), Query Frame = 3
Query:   96 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQH+++NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEAFI TA  IY+KIQ G+FDV NE+ GIK+
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKI 187          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.178e-85
Identity = 156/187 (83.42%), Postives = 167/187 (89.30%), Query Frame = 3
Query:   96 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            M+YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+ ID K IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL SWLEDARQH+++NM IMLIGNK DL  RR V  EEGE FA+EHGLIFME SAKTA NVEEA+I TA  IY+KIQ G+FDV NE+ GIK+
Sbjct:    1 MTYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKI 187          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.440e-83
Identity = 150/185 (81.08%), Postives = 169/185 (91.35%), Query Frame = 3
Query:  102 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            Y++LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK IKLQIWDTAGQESFRSITRSYYRG+AGALLVYDITRR+TFNHL  WL+DAR +AN+NMTI+LIGNK D+  +RAVS EEG QFA E+GLIF+E SAKTA NVEEAF+ TA+ IY+KIQ G FD++NES+GIK+
Sbjct:    2 YSFLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKL 186          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 4.817e-63
Identity = 117/188 (62.23%), Postives = 147/188 (78.19%), Query Frame = 3
Query:   90 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            T  +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY+ IQDG  D++    G++
Sbjct:    4 TPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ 191          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 4.817e-63
Identity = 117/188 (62.23%), Postives = 147/188 (78.19%), Query Frame = 3
Query:   90 TNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            T  +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY+ IQDG  D++    G++
Sbjct:    4 TPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ 191          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.216e-63
Identity = 116/185 (62.70%), Postives = 146/185 (78.92%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY+ IQDG  D++    G++
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ 191          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.216e-63
Identity = 116/185 (62.70%), Postives = 146/185 (78.92%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            +Y+Y+FKYIIIGD GVGKSCLL QFT+K+F      TIGVEFG R+I +  + IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL+SWL DAR   N N  I+LIGNK DL  +R V+ EE +QFA+E+GL+F+EASAKT +NVE+AF++ A  IY+ IQDG  D++    G++
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ 191          
The following BLAST results are available for this feature:
BLAST of CN181770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_CHICK1.259e-8784.49Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA1.259e-8784.49Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_RAT2.804e-8783.96Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2B_HUMAN5.289e-8683.96Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2B_MOUSE1.178e-8583.42Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_DICDI1.440e-8381.08Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB14_RAT4.817e-6362.23Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PIG4.817e-6362.23Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_PONAB8.216e-6362.70Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_MOUSE8.216e-6362.70Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181770 ID=CN181770; Name=CN181770; organism=Citrus sinensis; type=EST; length=753bp
GAGGTTCCTTTCTCGTTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATA
AATAAATTGACTCCTGATTGATCGGTCCTCATCAATCAAACAAACATGTC
GTACGCTTACCTCTTCAAGTACATCATCATCGGCGATACCGGAGTTGGTA
AATCATGTCTTCTTCTCCAATTCACGGATAAGCGGTTTCAGCCGGTTCAC
GACCTAACTATAGGAGTTGAATTTGGGGCCAGAATGATCACCATCGATAA
CAAACCGATCAAACTCCAAATCTGGGACACGGCTGGTCAAGAATCCTTCA
GATCTATTACCAGGTCTTACTATAGAGGGGCTGCTGGTGCATTACTTGTC
TATGATATTACCAGGAGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGA
GGATGCAAGGCAGCATGCAAATGCAAACATGACTATTATGCTCATTGGTA
ACAAGTGTGATCTTGCTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAG
CAGTTTGCAAAGGAGCATGGATTGATCTTCATGGAAGCCTCTGCAAAAAC
TGCTCAGAATGTTGAGGAGGCATTTATAAAAACTGCTGCAACAATATACA
AGAAAATTCAGGATGGAGTTTTTGATGTATCGAATGAGTCCTATGGCATA
AAGGTTGGATATGGAGGAATACCCGGGCCATCGGGAGGCAGAGATGGCTC
TTCTTCTCAAGCTGGAGGTTGTTGCAGTTGAGAGTTGAAGATATGCTATT
TTA
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