CN181770

Overview
NameCN181770
Unique NameCN181770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 103/185 (55.68%), Postives = 135/185 (72.97%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  I  KI+ G  D      GI+
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQ 188          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.007e-52
Identity = 103/185 (55.68%), Postives = 135/185 (72.97%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  I  KI+ G  D      GI+
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQ 188          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.717e-52
Identity = 103/185 (55.68%), Postives = 135/185 (72.97%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  I  KI+ G  D      GI+
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELDPERMGSGIQ 188          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.525e-52
Identity = 101/185 (54.59%), Postives = 135/185 (72.97%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIK 653
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIG+EFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ ++L GNK DL   R V+  E  +FA+E+ L+F+E SA T +NVEEAF++ A  I  KI+ G  D      GI+
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELDPERMGSGIQ 188          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.042e-49
Identity = 95/179 (53.07%), Postives = 128/179 (71.51%), Query Frame = 3
Query:  102 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 638
            Y YLFK ++IGD+GVGKS LL++FT   F      TIGVEF  R I +DNK IK QIWDTAGQE +R+IT +YYRGA GAL+VYDIT++ +F+++  WL++ R+HA++N+ IML+GNK DL H RAVSTEE + FA E+ L F+E SA  A NVEEAF      I++ + +   +  ++
Sbjct:    7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDD 185          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 93/183 (50.82%), Postives = 128/183 (69.95%), Query Frame = 3
Query:  108 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            YL K+IIIG   VGKSCLL +F D +F+     TIGV+F +R++ I  K +KLQIWDTAGQE FRS+  SYYRG+AG  LVYD+T RE++NH+ +WL D +  A+ ++TI+L+GNK DL  +R V+  E  + A+E+GL+FME SA T + VEE F+K   TI  KI  G  +V+ E  G+++
Sbjct:    6 YLVKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLKCTRTIMTKIDSG--EVNLEHLGVQI 186          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 94/184 (51.09%), Postives = 129/184 (70.11%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGI 650
            SY YL K ++IGD+GVGKSCLLL+F++  F P    TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LL+YD+T +++F+++ +W  +  QHA+ N+  +LIGNKCD   +R VS E+G+  A E G+ F+EASAKT  NV+EAF   A  I K+  D   + SN++  +
Sbjct:    5 SYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNV 188          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 93/172 (54.07%), Postives = 118/172 (68.60%), Query Frame = 3
Query:   87 QTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 602
            +T+  Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TRR TF + A WL++ R H + N+ +MLIGNK DL H  AV TE+G+ FA+   L FME SA  A NVE AF +    IY+
Sbjct:    5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYR 176          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.663e-47
Identity = 91/188 (48.40%), Postives = 128/188 (68.09%), Query Frame = 3
Query:   93 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNESYGIKV 656
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL++  ++A+ N+  +L+GNKCDL  ++ V     ++FA   G+ F+E SAK A NVE+AF+  AA I K++  G     +E   + +
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNI 189          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.172e-47
Identity = 89/169 (52.66%), Postives = 119/169 (70.41%), Query Frame = 3
Query:   93 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIY 599
            N    Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + ID+K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ I+LIGNKCDL ++R V TE+ ++FA++ GL F+E SA  A NVE AF      IY
Sbjct:   11 NAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIY 179          
The following BLAST results are available for this feature:
BLAST of CN181770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_HUMAN1.007e-5255.68Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN1.007e-5255.68Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB4A_RAT1.717e-5255.68Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_MOUSE6.525e-5254.59Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
YPT3_SCHPO1.042e-4953.07GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAB4_DICDI1.504e-4850.82Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
YPT2_SCHPO9.751e-4851.09GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RB11D_LOTJA9.751e-4854.07Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAB1_DISOM1.663e-4748.40Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RB11A_LOTJA2.172e-4752.66Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181770 ID=CN181770; Name=CN181770; organism=Citrus sinensis; type=EST; length=753bp
GAGGTTCCTTTCTCGTTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATA
AATAAATTGACTCCTGATTGATCGGTCCTCATCAATCAAACAAACATGTC
GTACGCTTACCTCTTCAAGTACATCATCATCGGCGATACCGGAGTTGGTA
AATCATGTCTTCTTCTCCAATTCACGGATAAGCGGTTTCAGCCGGTTCAC
GACCTAACTATAGGAGTTGAATTTGGGGCCAGAATGATCACCATCGATAA
CAAACCGATCAAACTCCAAATCTGGGACACGGCTGGTCAAGAATCCTTCA
GATCTATTACCAGGTCTTACTATAGAGGGGCTGCTGGTGCATTACTTGTC
TATGATATTACCAGGAGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGA
GGATGCAAGGCAGCATGCAAATGCAAACATGACTATTATGCTCATTGGTA
ACAAGTGTGATCTTGCTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAG
CAGTTTGCAAAGGAGCATGGATTGATCTTCATGGAAGCCTCTGCAAAAAC
TGCTCAGAATGTTGAGGAGGCATTTATAAAAACTGCTGCAACAATATACA
AGAAAATTCAGGATGGAGTTTTTGATGTATCGAATGAGTCCTATGGCATA
AAGGTTGGATATGGAGGAATACCCGGGCCATCGGGAGGCAGAGATGGCTC
TTCTTCTCAAGCTGGAGGTTGTTGCAGTTGAGAGTTGAAGATATGCTATT
TTA
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