CN181770

Overview
NameCN181770
Unique NameCN181770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKKIQD 614
            +K +++GD GVGKS L +QF  K F P +D TI   +  +   IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F      I +++ +
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPE 181          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLE-DARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKKIQD 614
            +K +++GD GVGKS L +QF  K F P +D TI   +  +   IDN+   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R     +  ++L+ NK DL H R V+ ++G++ A ++ + ++E SAK    NV++ F      I +++ +
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPE 181          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 55/164 (33.54%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 602
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDL   R V T++ +  A+ +G+ F+E SAKT Q V++AF      I K
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 165          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 53/155 (34.19%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 575
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct:    4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB28_BOVIN (Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.586e-20
Identity = 57/164 (34.76%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  117 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNK-PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW---LEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATI 596
            K +++GD   GK+ L   F  + F   +  TIG++F  R IT+     + LQ+WD  GQ     +   Y  GA G LLVYD+T  ++F +L  W   ++   + +     + L+GNK DL H R V  E+  +F +E+G      SAKT  +V   F K AA I
Sbjct:   14 KIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGSLNVTLQVWDIGGQTIGGKMLDKYIYGAQGVLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 177          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RERG_BOVIN (Ras-related and estrogen-regulated growth inhibitor OS=Bos taurus GN=RERG PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 66/168 (39.29%), Postives = 97/168 (57.74%), Query Frame = 3
Query:  117 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS-YYRGAAGALLVYDITRRETFNH---LASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQ-NVEEAFIKTAATIYKK 605
            K  I G  GVGKS L+++F  KRF   +D T+   +     TID++ + ++I DTAGQE   +I R  + R   G +LVYDIT R +F     L + L++ ++  N  +T++L+GNK DL H R VSTEEGE+ A E    F E SA T + N+ E F +    + ++
Sbjct:    8 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVTMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 170          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RASH_RAT (GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 53/155 (34.19%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 575
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 53/155 (34.19%), Postives = 89/155 (57.42%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA-NMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 575
            +K +++G  GVGKS L +Q     F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++  ++ ++ ++L+GNKCDLA  R V + + +  A+ +G+ ++E SAKT Q VE+AF
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAF 156          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 575
            +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++L+GNK DL   R V + EG   A+E G  FME SAK+   V+E F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.602e-20
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 3
Query:  114 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 575
            +K +++G  GVGKS L +QF    F   +D TI  +F  + I +D+ P  L+I DTAG E F S+   Y +   G +LVY +  +++F  +    +   R      + ++L+GNK DL   R V + EG   A+E G  FME SAK+   V+E F
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
The following BLAST results are available for this feature:
BLAST of CN181770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASM_RAT6.586e-2033.14Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE6.586e-2033.14Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASK_MELGA6.586e-2033.54GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RASH_MSVNS6.586e-2034.19GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RAB28_BOVIN6.586e-2034.76Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 ... [more]
RERG_BOVIN8.602e-2039.29Ras-related and estrogen-regulated growth inhibito... [more]
RASH_RAT8.602e-2034.19GTPase HRas OS=Rattus norvegicus GN=Hras1 PE=1 SV=... [more]
RASH_HUMAN8.602e-2034.19GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RAP2C_MOUSE8.602e-2036.13Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN8.602e-2036.13Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181770 ID=CN181770; Name=CN181770; organism=Citrus sinensis; type=EST; length=753bp
GAGGTTCCTTTCTCGTTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATA
AATAAATTGACTCCTGATTGATCGGTCCTCATCAATCAAACAAACATGTC
GTACGCTTACCTCTTCAAGTACATCATCATCGGCGATACCGGAGTTGGTA
AATCATGTCTTCTTCTCCAATTCACGGATAAGCGGTTTCAGCCGGTTCAC
GACCTAACTATAGGAGTTGAATTTGGGGCCAGAATGATCACCATCGATAA
CAAACCGATCAAACTCCAAATCTGGGACACGGCTGGTCAAGAATCCTTCA
GATCTATTACCAGGTCTTACTATAGAGGGGCTGCTGGTGCATTACTTGTC
TATGATATTACCAGGAGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGA
GGATGCAAGGCAGCATGCAAATGCAAACATGACTATTATGCTCATTGGTA
ACAAGTGTGATCTTGCTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAG
CAGTTTGCAAAGGAGCATGGATTGATCTTCATGGAAGCCTCTGCAAAAAC
TGCTCAGAATGTTGAGGAGGCATTTATAAAAACTGCTGCAACAATATACA
AGAAAATTCAGGATGGAGTTTTTGATGTATCGAATGAGTCCTATGGCATA
AAGGTTGGATATGGAGGAATACCCGGGCCATCGGGAGGCAGAGATGGCTC
TTCTTCTCAAGCTGGAGGTTGTTGCAGTTGAGAGTTGAAGATATGCTATT
TTA
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