CN181770

Overview
NameCN181770
Unique NameCN181770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 90/190 (47.37%), Postives = 131/190 (68.95%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA----ATIYKKIQDGVFDVSNESYGIKV 656
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A    A + KK++      SN+  G+K+
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQ--GVKI 191          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 90/190 (47.37%), Postives = 131/190 (68.95%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA----ATIYKKIQDGVFDVSNESYGIKV 656
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A    A + KK++      SN+  G+K+
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQ--GVKI 191          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 90/190 (47.37%), Postives = 131/190 (68.95%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA----ATIYKKIQDGVFDVSNESYGIKV 656
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A    A + KK++      SN+  G+K+
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQ--GVKI 191          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 88/175 (50.29%), Postives = 122/175 (69.71%), Query Frame = 3
Query:   93 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDG 617
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R I +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T RE++ ++  WL++  ++A+ N+  +L+GNK DL  ++ V     ++FA   G+ F+E SAK A NVE+AF+  AA I K++  G
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG 176          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 86/167 (51.50%), Postives = 120/167 (71.86%), Query Frame = 3
Query:  102 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 602
            + YLFK ++IGD+ VGKSC LL+F D  +   +  TIGV+F  R + ++ K +KLQIWDTAGQE FR+IT SYYRGA G ++VYDIT  E+FN++  WL++  ++AN ++  +L+GNKCDLA  RAV T   + +A+E G+ F+E SAK + NVEEAF+  +A I K
Sbjct:    5 FDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKK 171          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 90/190 (47.37%), Postives = 131/190 (68.95%), Query Frame = 3
Query:   99 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA----ATIYKKIQDGVFDVSNESYGIKV 656
            +Y YLFK ++IGD+GVGK+C+L +F++  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++ +W+ +  +HA+A++  M++GNKCD+  +R VS E GE+ A ++G+ FME SAK   NVE AF   A    A + KK++      SN+  G+K+
Sbjct:    4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQ--GVKI 191          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 87/172 (50.58%), Postives = 121/172 (70.35%), Query Frame = 3
Query:   93 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 608
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNK DL  ++ V  +  + FA E G+ F+E SAK A NVE+AF+  AA I  ++
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRM 173          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 87/165 (52.73%), Postives = 115/165 (69.70%), Query Frame = 3
Query:  108 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYK 602
            Y+FK ++IGD+ VGKS LL +F    F      TIGVEF  R + ID + +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R++F+H+A WLE+ R HA+ N+ IMLIGNK DL   R V TE+ ++FA+   L FME SA  + NVE AF+     IY+
Sbjct:   17 YVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYR 181          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 89/172 (51.74%), Postives = 119/172 (69.19%), Query Frame = 3
Query:  102 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDL-AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQD 614
            Y YL K ++IGD+GVGKSCLLL+F+D  F      TIG++F  R I +D K IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G+  A E+G+ F E SAKT  NVEE F   A  I +++ D
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 183          
BLAST of CN181770 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.009e-44
Identity = 87/172 (50.58%), Postives = 120/172 (69.77%), Query Frame = 3
Query:   93 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKI 608
            N  Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R + +D K IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNK DL  ++ V     + FA E G+ F+E SAK A NVE+AF+  AA I  ++
Sbjct:    2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRM 173          
The following BLAST results are available for this feature:
BLAST of CN181770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_MACFA3.468e-4547.37Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN3.468e-4547.37Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA3.468e-4547.37Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB1B_MACFA3.468e-4550.29Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
YPTM1_MAIZE4.529e-4551.50GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB8A_BOVIN4.529e-4547.37Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
YPTV1_VOLCA7.726e-4550.58GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RGP1_ORYSJ7.726e-4552.73Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB1BV_BETVU7.726e-4551.74Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
YPTC1_CHLRE1.009e-4450.58GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181770 ID=CN181770; Name=CN181770; organism=Citrus sinensis; type=EST; length=753bp
GAGGTTCCTTTCTCGTTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATA
AATAAATTGACTCCTGATTGATCGGTCCTCATCAATCAAACAAACATGTC
GTACGCTTACCTCTTCAAGTACATCATCATCGGCGATACCGGAGTTGGTA
AATCATGTCTTCTTCTCCAATTCACGGATAAGCGGTTTCAGCCGGTTCAC
GACCTAACTATAGGAGTTGAATTTGGGGCCAGAATGATCACCATCGATAA
CAAACCGATCAAACTCCAAATCTGGGACACGGCTGGTCAAGAATCCTTCA
GATCTATTACCAGGTCTTACTATAGAGGGGCTGCTGGTGCATTACTTGTC
TATGATATTACCAGGAGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGA
GGATGCAAGGCAGCATGCAAATGCAAACATGACTATTATGCTCATTGGTA
ACAAGTGTGATCTTGCTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAG
CAGTTTGCAAAGGAGCATGGATTGATCTTCATGGAAGCCTCTGCAAAAAC
TGCTCAGAATGTTGAGGAGGCATTTATAAAAACTGCTGCAACAATATACA
AGAAAATTCAGGATGGAGTTTTTGATGTATCGAATGAGTCCTATGGCATA
AAGGTTGGATATGGAGGAATACCCGGGCCATCGGGAGGCAGAGATGGCTC
TTCTTCTCAAGCTGGAGGTTGTTGCAGTTGAGAGTTGAAGATATGCTATT
TTA
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