CN181764

Overview
NameCN181764
Unique NameCN181764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 2
Query:   38 GFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIDGHS--YFNLVLITNVGGAGDVRAVSLKGSR--TRWQPMSRNWGQNWQ 595
            G  S +S  +GYG W +  AT+Y              Y +   Q  + +  AA   +LF NG  CG+C+QI C  + + C    + V  T+ C PGG C     HFD+S   F  +A          AG++ + Y+RV C+    + F +D  S  Y+  +L+    G GD+ AV +  +R    W+ M ++WG  W+
Sbjct:   32 GRRSTMSLGRGYG-WSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGN-RACSGRPVTVVITDSC-PGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRFAMNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWR 226          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB3_ARATH (Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 60/183 (32.79%), Postives = 85/183 (46.45%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYS-QGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA-------QYRAGIVPVIYRRVRCKRNG-GIRFTI-DGHSYFNLVLITNV-GGAGDVRAVSLKGSRTR-WQPMSRNWGQNW 592
            W+ A AT+Y              YG L   +       A++  LF NG  CGAC+++ C  D   C R ++ V  T+ CP    C   + HFDLS  VF  +A           G++PVIYRR  CK  G  I F + +G + F L L+     G GD+ ++ ++ +  R W  M   WG NW
Sbjct:   36 WLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCGACYKVRCL-DKSICSRRAVTVIITDECP---GCSKTSTHFDLSGAVFGRLAIAGESGPLRNRGLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLEMKHVWGANW 214          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 61/184 (33.15%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   77 GWINAHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTID--GHSYFNLVLITNVGGAGDVRAVSLKGSRTRWQPMSRNWGQNWQ 595
            GW  A AT+Y              Y     Q  + +  AA S +L+  G  CGAC+++ C  +   C      V  T+ CP GG C     HFD+S      +A+         AGI+ V YRRV CK +G  I F +D   + ++  VLI    G GD+ AV L  +   W PM +NWG  W+
Sbjct:   63 GWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYEVKCTTNAA-CSGQPATVVITDECP-GGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWR 244          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB16_ORYSJ (Expansin-B16 OS=Oryza sativa subsp. japonica GN=EXPB16 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 61/183 (33.33%), Postives = 81/183 (44.26%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQ-GYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA-------QYRAGIVPVIYRRVRCKRNG-GIRFTI-DGHSYFNLVLITNV-GGAGDVRAVSLK-GSRTRWQPMSRNWGQNW 592
            W  A AT+Y              YG L       T   A+S  LF  G  CGAC+++ C  D   C R ++ V  T+ C PGG C     HFDLS   F  +A           G + V+YRR  CK  G  I F + +G + F L L+     G GD+ ++ LK  +  +WQ M   WG  W
Sbjct:   45 WHPATATWYGSADGDGSDGGACGYGTLVDVVPMKTRVGAVSPVLFKGGEGCGACYKVRCL-DASICSRRAVTVIVTDEC-PGGVCAFGRTHFDLSGAAFARLAVAGHGGQLQNRGEISVVYRRTACKYGGKNIAFHVNEGSTTFWLSLLVEFEDGDGDIGSMQLKQANSAQWQDMKHIWGATW 225          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB1_ARATH (Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 54/183 (29.51%), Postives = 86/183 (46.99%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYS-QGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA-------QYRAGIVPVIYRRVRCKRNG-GIRFTIDGHS--YFNLVLITNVGGAGDVRAVSLKGSRTR-WQPMSRNWGQNW 592
            W+ A AT+Y              YG+L   + +     A+S  LF  G  CGAC+++ C  D   C + ++ + AT+  P G      + HFDLS   F H+A           G++ ++YRR  CK  G  I F ++  S  Y+  +LI    G GD+ ++ ++ + ++ W  M   WG NW
Sbjct:   40 WLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEGCGACYKVRCL-DKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVIRNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKEWISMKHIWGANW 221          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB18_ORYSJ (Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.202e-14
Identity = 59/186 (31.72%), Postives = 86/186 (46.24%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA------QYR-AGIVPVIYRRVRCKRNG-GIRFTID---GHSYFNLVLITNVGGAGDVRAVSL--KGSRTRWQPMSRNWGQNWQ 595
            W N  AT+Y              Y     Q  + +  AA S +++ +GL CG+C+Q+ C+ +   C    + V  T+ C PGG C     HFDLS   F  +A      Q R AG++ + Y RV C   G  + F +D     SYF  VL+    G GD+  + L   G+   W PM ++WG  W+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSA-CSGNPVTVVLTDEC-PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVMLTFAVDAGSNPSYF-AVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWK 219          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB15_ORYSJ (Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.570e-14
Identity = 56/186 (30.11%), Postives = 86/186 (46.24%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA------QYR-AGIVPVIYRRVRCKRNGGIRFT----IDGHSYFNLVLITNVGGAGDVRAVSL--KGSRTRWQPMSRNWGQNWQ 595
            W N  AT+Y              Y G ++   + +  AA S +++ +GL CG+C+Q+ C  +   C    + V  T+ C PGG C     HFDLS   F  +A      Q R AG++ + Y RV C   GG++ T    +  +  +  VL+    G GD+  V L   G+   W  M ++WG  W+
Sbjct:   37 WSNGGATWYGAANGAGSDGGACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSA-CSGNPVTVVLTDEC-PGGPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNW-GGVKLTFVVDVGSNPNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWK 219          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB7_ORYSJ (Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXPB7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 60/204 (29.41%), Postives = 89/204 (43.63%), Query Frame = 2
Query:   56 SSVQGYGGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWC-LRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTID--GHSYFNLVLITNVGGAGDVRAVSLKGSRTR-----------WQPMSRNWGQNWQ 595
            SS  G GGW+NA AT+Y               G  N+    +   T+  +  LF +G  CG+C+QI C   P    L  ++I+T  N+ P         +HFDLS   F  +A+         AGI+ + +RRV C+  G  + F ++   +  +  +L+    G GDV  V L  SR             W PM  +WG  W+
Sbjct:   84 SSGGGGGGWLNARATWYGAPNGAGPDDNGGACGFKNVNLPPFSAMTSCGNEPLFKDGKGCGSCYQIRCVGHPACSGLPETVIITDMNYYPVS------LYHFDLSGTAFGAMAKDNRNDELRHAGIIDIQFRRVPCQYPGLTVTFHVEQGSNPVYMAILVEYENGDGDVVQVDLMESRYSTGGVDGTPTGVWTPMRESWGSIWR 281          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB17_ORYSJ (Expansin-B17 OS=Oryza sativa subsp. japonica GN=EXPB17 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 58/183 (31.69%), Postives = 81/183 (44.26%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQ-GYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRA-------GIVPVIYRRVRCKRNG-GIRFTI-DGHSYFNLVLITNV-GGAGDVRAVSLK-GSRTRWQPMSRNWGQNW 592
            W  A AT+Y              YG+L           ++S  LF +G  CGAC+++ C  D   C R ++ V  T+ C PGG C     HFDLS   F  +A   A       G + V+YRR  CK  G  I F + +G + F L L+     G GD+ ++ +K  +   W  M   WG  W
Sbjct:   48 WRPATATWYGDAEGDGSTGGACGYGSLVDVVPMKARVGSVSPVLFKDGEGCGACYKVKCL-DHGICSRRAVTVIVTDEC-PGGLCAFGRTHFDLSGAAFSRMAVAGAGGHLRDRGQLSVVYRRTACKYGGKNIAFRVNEGSTNFWLSLLVEFEDGQGDIGSMQIKQANSVEWLDMKHVWGATW 228          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB2_ARATH (Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 55/185 (29.73%), Postives = 86/185 (46.49%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIA------QYR-AGIVPVIYRRVRCKRNG-GIRFTIDGHSYFN--LVLITNVGGAGDVRAVSLKGS--RTRWQPMSRNWGQNWQ 595
            W  A +T+Y              YGN  +Q  +    +A   +LF +G  CGAC+Q+ C +    C +  + V  T+ CP    C   + HFDLS   F  +A      Q R  G + ++Y++V C   G  + F +D  S  N   VL+  V G G++  + LK +    +W  MS++WG  W+
Sbjct:   47 WSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSAGGPSLFKSGKGCGACYQVKCTSKSA-CSKNPVTVVITDECP---GCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWK 227          
The following BLAST results are available for this feature:
BLAST of CN181764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
EXPB5_ORYSJ9.836e-1730.30Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB3_ARATH9.836e-1732.79Expansin-B3 OS=Arabidopsis thaliana GN=EXPB3 PE=2 ... [more]
EXB11_ORYSJ2.862e-1633.15Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB16_ORYSJ6.375e-1633.33Expansin-B16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB1_ARATH1.087e-1529.51Expansin-B1 OS=Arabidopsis thaliana GN=EXPB1 PE=2 ... [more]
EXB18_ORYSJ1.202e-1431.72Expansin-B18 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB15_ORYSJ1.570e-1430.11Expansin-B15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB7_ORYSJ3.498e-1429.41Expansin-B7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB17_ORYSJ4.569e-1431.69Expansin-B17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPB2_ARATH1.329e-1329.73Putative expansin-B2 OS=Arabidopsis thaliana GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181764 ID=CN181764; Name=CN181764; organism=Citrus sinensis; type=EST; length=597bp
GAGGAAAAAAATGGCTCTTTGGGTGATTCTTTGTGTTGGGTTTCTCTCAT
TGGTCTCATCCGTTCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACT
TTCTATGGAGGTGGTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTA
CGGCAATTTGTACAGCCAAGGTTATGGTACTAATACCGCAGCACTTAGCA
CTGCTTTGTTCAACAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATG
TGCGCTAATGACCCGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGC
CACTAACTTTTGCCCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACT
TTGATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGT
ATTGTTCCTGTAATCTACAGAAGGGTGAGATGCAAGAGAAATGGGGGCAT
AAGGTTCACAATCGATGGCCATTCTTACTTCAATTTAGTTCTAATAACAA
ACGTGGGTGGAGCTGGTGACGTGCGTGCTGTATCCCTCAAAGGTTCAAGG
ACTAGATGGCAACCGATGTCCAGAAACTGGGGCCAAAACTGGCAAAG
back to top