CN181764

Overview
NameCN181764
Unique NameCN181764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB6_ORYSJ (Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXPB6 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 61/204 (29.90%), Postives = 90/204 (44.12%), Query Frame = 2
Query:   53 VSSVQGYG-GWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTIDGHS---YFNLVLITNVGGAGDVRAVSLKGSRTR-------WQPMSRNWGQNWQ 595
            VS    YG GW+ A AT+Y               G  N+    + + T+  +  +F +G  CG+C+QI C  DP  C     ++I+T  N+ P         +HFDLS   F  +A+         +GI+ + +RRV C   G  I F ++  S   YF  VL+      GDV  V L  S++        W PM  +WG  W+
Sbjct:   34 VSDASAYGSGWLPARATWYGAPTGAGPDDNGGACGFKNVNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCNKDPS-CSGNIETVIITDMNYYPVA------RYHFDLSGTAFGAMAKPGLNDKLRHSGIIDIQFRRVPCNYPGLKINFHVEEGSNPVYF-AVLVEYEDLDGDVVQVDLMESKSAYGGATGVWTPMRESWGSIWR 229          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB4_ORYSJ (Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXPB4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.470e-12
Identity = 58/196 (29.59%), Postives = 88/196 (44.90%), Query Frame = 2
Query:   71 YGGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYG--TNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTIDGHS---YFNLVLITNVGGAGDVRAVSLKGSRT-------RWQPMSRNWGQNWQ 595
            +G W  A AT+Y               G  ++  Y   + T+  +  LF +G  CG+C++I C  D     R  ++I+T  N+ P   +      HFDLS   F  +A+         +GI+ + + RV C+  G  I F ++ +S   YF  VL+    G GDV  V L  S+T       RW PM  +WG  W+
Sbjct:   52 WGPWTKARATWYGQPNGAGPDDNGGACGFKHTNQYPFMSMTSCGNQPLFKDGKGCGSCYKIRCTKDQSCSGRSETVIITDMNYYPVAPF------HFDLSGTAFGRLAKPGLNDKLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF-AVLVEYEDGDGDVVQVDLMESKTAHGPPTGRWTPMRESWGSIWR 240          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB10_ORYSJ (Expansin-B10 OS=Oryza sativa subsp. japonica GN=EXPB10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  206 LFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDP-PNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTI-----DGHSYFNLVLITNVGGAGDVRAVSL--KGSRTRWQPMSRNWGQNWQ 595
            +F +G  CG+CF++ C+  P+ C    +I+  T+        +P   +HFDLS   F  +A+        +AGI+ + +RRVRCK  G  + T         +YF  VL+  VGG GDV  V L  KGS   W+P++ +WG  W+
Sbjct:   85 IFKDGKGCGSCFEVKCSK-PEACSDKPVIIHITDMN-----TEPIAAYHFDLSGHAFGAMAKEGKDEELRKAGIIDMQFRRVRCKYPGETKVTFHVEKGSNPNYF-AVLVKYVGGDGDVVKVELKEKGSE-EWKPLNESWGAIWR 221          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB10_MAIZE (Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.507e-12
Identity = 55/188 (29.26%), Postives = 93/188 (49.47%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIV--TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTID---GHSYFNLVLITNVGGAGDVRAVSL--KGSRTRWQPMSRNWGQNWQ 595
            W++A AT+Y                Y ++    + +  A  +  +F +GL CG+CF+I C + P  C    ++V  T  N+ P         +HFDL+   F  +A+        +AGI+ + +RRV+CK +  + F ++   G +Y  L L+  V G GD+ AV +  KGS T ++P+  +WG  W+
Sbjct:   50 WLDAKATWYGKPTGAGPDDNGGGCGYKDVNKPPFNSMGACGNIPIFKDGLGCGSCFEIKC-DKPVECSGKPVVVHITDMNYEPIAA------YHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYDSKVTFHLEKGCGPNYLAL-LVKYVDGDGDIVAVDVKEKGSDT-YEPLKHSWGAIWR 228          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB11_MAIZE (Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.276e-12
Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2
Query:   71 YGG-WINAHATFYXXXXXXXXXXXXXX--YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIV--TATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGGIRFTIDG--HSYFNLVLITNVGGAGDVRAVSL--KGSRTRWQPMSRNWGQNWQ 595
            YG  W++A AT+Y                Y ++    + +  A  +  +F +GL CG+CF+I C + P  C    ++V  T  N+ P         +HFDL+   F  +A+        +AGI+ + +RRV+CK    + F ++   +  +  +L+  V G GD+ AV +  KGS T ++P+  +WG  W+
Sbjct:   45 YGSDWLDAKATWYGKPTGAGPDDNGGGCGYKDVNKAPFNSMGACGNVPIFKDGLGCGSCFEIKC-DKPAECSGKPVVVYITDMNYEPIAA------YHFDLAGTAFGAMAKKGEEEKLRKAGIIDMQFRRVKCKYGSKVTFHLEKGCNPNYLALLVKYVDGDGDIVAVDIKEKGSDT-YEPLKHSWGAIWR 227          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB2_ORYSJ (Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXPB2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 62/214 (28.97%), Postives = 91/214 (42.52%), Query Frame = 2
Query:   11 MALWVILCVGFLSLVSSVQGYGGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLR-GSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTIDGHS--YFNLVLITNVGGAG-----DVRAVSLKGSRTR-WQPMSRNWGQNWQ 595
            M L V+   GF    + V     W+ A AT+Y               G  N     + + T+  +  LF +G  CGAC+QI C N+P    +  ++I+T  N+ P         +HFDLS   F  +A+         AGI+ + +RRV C   G  + F ++  S   +  VL+      G     DV      G  TR W PM R+WG  W+
Sbjct:   11 MLLSVLATYGF---AAGVVYTNDWLPAKATWYGQPNGAGPDDNGGACGFKNTNQYPFMSMTSCGNEPLFQDGKGCGACYQIRCTNNPSCSGQPRTVIITDMNYYPVA------RYHFDLSGTAFGAMARPGLNDQLRHAGIIDIQFRRVPCYHRGLYVNFHVEAGSNPVYLAVLVEFANKDGTVVQLDVMESLPSGKPTRVWTPMRRSWGSIWR 215          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB9_MAIZE (Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 2
Query:   74 GGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGG--IRFTIDG--HSYFNLVLITNVGGAGDVRAVSLKGS-RTRWQPMSRNWGQNWQ 595
            G W+ A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+++ C   P+ C     ++ +T  N+ P         +HFDLS   F  +A+          GI+ V +RRVRCK   G  I F I+   +  +  VL+  V   GD+  + ++      W+PM  +WG  W+
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVFITDMNYEPIA------PYHFDLSGKAFGSLAKPGLNDKLRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYVAVLVKFVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWR 223          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB1_MAIZE (Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.772e-11
Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 2
Query:   74 GGWINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNGG--IRFTIDG--HSYFNLVLITNVGGAGDVRAVSLKGS-RTRWQPMSRNWGQNWQ 595
            G W+ A AT+Y               G  N+    Y   TA  +  +F +G  CG+C+++ C   P+ C     ++ +T  N+ P         +HFDLS   F  +A+          GI+ V +RRVRCK   G  I F I+   +  +  VL+  V   GD+  + ++      W+PM  +WG  W+
Sbjct:   41 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPE-CSGNPVTVYITDMNYEPIA------PYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWR 223          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.728e-11
Identity = 55/188 (29.26%), Postives = 84/188 (44.68%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYG--NLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG--SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTIDGHS---YFNLVLITNVGGAGDVRAVSLKGSRTR-WQPMSRNWGQNWQ 595
            W  A AT+Y               G  N     + + T+  +  +F +G  CG+C+QI C N P  C     ++I+T  N+ P         +HFDLS   F  +A+         AGI+ + ++RV C   G  + F ++  S   YF  VL+    G GDV  V L  + ++ W PM  +WG  W+
Sbjct:   42 WEVARATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPA-CSGNPETVIITDMNYYPVS------KYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSNPVYF-AVLVEYEDGDGDVVQVDLMEANSQSWTPMRESWGSIWR 221          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB12_ORYSJ (Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.175e-11
Identity = 55/196 (28.06%), Postives = 87/196 (44.39%), Query Frame = 2
Query:   77 GWINAHATFYXXXXXXXXXXXXXXYGNLYSQG-YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPG--------GWCDPPNHHFDLSQPVFQHIA------QYR-AGIVPVIYRRVRCKRNG-GIRFTIDGHSYFN--LVLITNVGGAGDVRAVSL----KGSRTRWQPMSRNWGQNWQ 595
            GW N  AT+Y              Y     Q  + +  AA S  ++++G  CG+C++++CA + + C    + V  T+  P G        G C     HFD+S   F  +A      Q R AG++ + Y RV C+  G G+ F +D  S  N   +L+       D+ AV +     G+   W PM ++WG  W+
Sbjct:   38 GWSNGIATWYGDPNGAGSEGGACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGN-EACSGIPVTVVITDQGPGGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVGLTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWR 232          
The following BLAST results are available for this feature:
BLAST of CN181764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
EXPB6_ORYSJ1.470e-1229.90Expansin-B6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB4_ORYSJ1.470e-1229.59Expansin-B4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB10_ORYSJ2.507e-1234.48Expansin-B10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB10_MAIZE2.507e-1229.26Expansin-B10 OS=Zea mays GN=EXPB10 PE=1 SV=2[more]
EXB11_MAIZE4.276e-1228.27Expansin-B11 OS=Zea mays GN=EXPB11 PE=1 SV=1[more]
EXPB2_ORYSJ1.625e-1128.97Expansin-B2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPB9_MAIZE2.772e-1127.89Expansin-B9 OS=Zea mays GN=EXPB9 PE=1 SV=2[more]
EXPB1_MAIZE2.772e-1127.89Expansin-B1 OS=Zea mays GN=EXPB1 PE=1 SV=2[more]
EXPB3_ORYSJ4.728e-1129.26Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXB12_ORYSJ6.175e-1128.06Expansin-B12 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181764 ID=CN181764; Name=CN181764; organism=Citrus sinensis; type=EST; length=597bp
GAGGAAAAAAATGGCTCTTTGGGTGATTCTTTGTGTTGGGTTTCTCTCAT
TGGTCTCATCCGTTCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACT
TTCTATGGAGGTGGTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTA
CGGCAATTTGTACAGCCAAGGTTATGGTACTAATACCGCAGCACTTAGCA
CTGCTTTGTTCAACAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATG
TGCGCTAATGACCCGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGC
CACTAACTTTTGCCCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACT
TTGATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGT
ATTGTTCCTGTAATCTACAGAAGGGTGAGATGCAAGAGAAATGGGGGCAT
AAGGTTCACAATCGATGGCCATTCTTACTTCAATTTAGTTCTAATAACAA
ACGTGGGTGGAGCTGGTGACGTGCGTGCTGTATCCCTCAAAGGTTCAAGG
ACTAGATGGCAACCGATGTCCAGAAACTGGGGCCAAAACTGGCAAAG
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