CN181746

Overview
NameCN181746
Unique NameCN181746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.193e-16
Identity = 63/199 (31.66%), Postives = 94/199 (47.24%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG-LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGK-KDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDF 649
            M HRK   PR GS G  PRKRA       K +P  +  +P +L  F+GYKAGMTH+    +KP S  + KE    VTI+E+PP+            +G L  L   WA    EE   ++ K                 + D  K K+    ++K     T +R+L  TQ   +  L +K+  ++EIQ+ GGS+  ++++
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNY 185          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDF 649
            M HRK   PR GS G  PRKRAS      +++P    ++P +L  F+GYK GM+HI    +KP S  + KE    V++IETPP+           P+G  +  T +   ++E++ +   +                 E   GK D   ++         +RVL  TQ + +  L +KK  ++E+QV GG +  ++++
Sbjct:    1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-------KVTRLKIDKEKMKGKLD---EINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNY 186          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.559e-16
Identity = 55/190 (28.95%), Postives = 94/190 (49.47%), Query Frame = 2
Query:   83 PRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            PR GSL F PRKRA     +++++  D+ +    +  F GYKAGMTH++   ++P S     E    VT++E PP+             G+R    +WA++L++++ R                           +DI+++++++ +    IRVLAHT  R + G+ +K   +MEI V G SV +++  A
Sbjct:    7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAA 175          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 63/199 (31.66%), Postives = 91/199 (45.73%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY-----CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL + PRKRA     +++ +PKD      R+  F GYKAGMTHI+   ++PG     KE    VT++E PPL         +   GL +   VW   LN+ V+RR                      D  ++  QA+L +++          +R+L HTQ   +K   +KK  +ME  + G  V  K D+A
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKD---SEVRMLGFAGYKAGMTHILMIDDRPG-LTKGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI----------------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYA 179          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.036e-16
Identity = 63/197 (31.98%), Postives = 90/197 (45.69%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY--KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAY 655
            K   PR GSL F PRKRA     K K++P+   +    L  F GYK GMTH++   +   S    KE    VTIIE P +         K   G  +L  +WA+ L+ ++ RR    KN+               ++   KK     L         I  LA+TQ   M G+ +K   LMEI+V GG +A++ ++A+
Sbjct:    3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRRVTSPKNY---------------DSTAAKKKYSDAL--AAGLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAF 180          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.659e-16
Identity = 66/206 (32.04%), Postives = 98/206 (47.57%), Query Frame = 2
Query:   53 SRMSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFA 652
            SR    K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++ PPL           P     RS+  VWA  L   +RR                      T   K D+  Q++K++++  V   +R L  TQ   + G+ +K   L+EI + G  SV +++ FA
Sbjct:    2 SRAMGLKINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFA 185          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.535e-16
Identity = 62/198 (31.31%), Postives = 96/198 (48.48%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWA-QHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY---CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            +   PR GS+ F PRKR +R   +V  +P+ D +    L AF GYK GMTH+     + GS     E    VTI+E PPL         KT  GL++L  V A  +L++E+ R+                     +     DI+A++E+++        IRVL HT+  K+  + +KK  ++E  + G SV  K+++A
Sbjct:    3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------------SVPKFDDIEAKIEELRNKIDDIDEIRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYA 176          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.010e-15
Identity = 63/200 (31.50%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFA 652
            K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE    VT+++ PPL           P     RS+  VWA  L   +RR                      T   K D+  Q++K++++  V   +R L  TQ   + G+ +K   L+EI + G  SV +++ FA
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFA 181          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.319e-15
Identity = 63/200 (31.50%), Postives = 97/200 (48.50%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRG--LRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTV---IRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GSVAQKVDFA 652
            K   PR GS+G  PRKRA+    +V+ +P+ +  KP  L  F  YKAGM H V   ++P S L+ KE  +AVT+++ PPL           P     R++  VWA  L + + R                      T   K D+  QL+K++++  V   +R L  TQ   + G+ +K   L+EI + G  SV ++++FA
Sbjct:    4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHRVL--------------------TLPEKLDVDKQLKKVEEFRDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERINFA 181          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 66/202 (32.67%), Postives = 93/202 (46.04%), Query Frame = 2
Query:   71 KFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFY---KNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKY-----CTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            K   PR GSL + PRKRA     +++++PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E PPL         +   GL +   VW   L++ V RR     KN+                    ++  QA+L +++          +R+L HTQ   + GLK KK  +ME  + G  V  K D+A
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKNY-------------------NEEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYA 179          
The following BLAST results are available for this feature:
BLAST of CN181746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL3_SULAC1.193e-1631.6650S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_SULTO1.559e-1629.4450S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_METTP1.559e-1628.9550S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_THEON2.036e-1631.6650S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_METB62.036e-1631.9850S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_PYRIL2.659e-1632.0450S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_METST4.535e-1631.3150S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_THENV1.010e-1531.5050S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_PYRAE1.319e-1531.5050S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_PYRKO2.939e-1532.6750S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181746 ID=CN181746; Name=CN181746; organism=Citrus sinensis; type=EST; length=655bp
GAGGATTTGCTATCACTTCGCTCCTTCAGCAACGCAAGAGTTCTAAGTGC
CGAGTAGGATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTA
GGATTTCTTCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGC
CTTTCCCAAGGATGACCCATCAAAACCATGCAGATTAACTGCTTTTTTAG
GCTACAAAGCTGGAATGACCCATATTGTCAGAGATGTTGAAAAGCCAGGA
TCAAAGCTGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAAC
ACCACCCCTGGTGGTTGTTGGGGTCGTTGGTTATGTCAAGACGCCCCGTG
GGCTTCGTTCTCTCTGCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTT
AGGAGAAGGTTTTACAAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCAC
TAAGTATACAAAGAAGTATGAAACTGATGATGGAAAGAAAGACATTCAGG
CTCAGCTGGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCC
CATACCCAGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCT
GATGGAGATCCAGGTCAATGGTGGATCAGTTGCCCAGAAAGTTGACTTTG
CTTAT
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