CN181745

Overview
NameCN181745
Unique NameCN181745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RT +N KIY++GK   E  SA TE D T+K ITPMGGF  YG +N D++++KG   G KKRV+TLR+S+   TSR ALE+++LK+IDTSS+FGHG FQ   EK ++ G LK
Sbjct:  272 GYHHRTSVNHKIYRIGKGDAED-SAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 64/115 (55.65%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RT  N K++++GK S E + A T+FD ++K ITPMGGF  YG V  DY+++KG   G KKRV+TLR++L  QTSR A E+++LK+IDTSSKFGHG FQ  +EK  + G LK
Sbjct:  272 GYHHRTSCNHKVFRIGKGSDEGN-ASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GY  RT++N KIY++G A  ++ +A T+FD TEK ITPMGGF  YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQ   E  ++ G LK
Sbjct:  271 GYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GY  RT++N KIY++G A  ++ +A T+FD TEK ITPMGGF  YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQ   E  ++ G LK
Sbjct:  271 GYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.799e-30
Identity = 65/116 (56.03%), Postives = 81/116 (69.83%), Query Frame = -3
Query:  194 NGYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 541
            NG+H RT +N K+Y++G A  ES  A TEFDRT+K I PMGGF  YG V  D++L+KG   G KKR+VT+R+SL   TSR A E + LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  270 NGFHHRTSINHKVYRVGSAGDESSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  248 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 538
            GYH RTE NK+I K+G    E              ITP GGF HYGV+  +Y+++KG   GP KR++ LR+++  Q   + + EI   +I T+SK G
Sbjct:  254 GYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQG 334          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  248 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 538
            GYH RTE NK+I K+G  ++E              ITP GGF HYG++  DY+++KG   GP KR+V +R ++  +   +  +  ++ ++ T SK G
Sbjct:  257 GYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = -3
Query:  245 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 538
            G+H RTE NK+I K+G+   E              I P GGF +YGVV  +Y+L+KG   GP KR+V LR+++     +  L E  L ++ T SK G+
Sbjct:  252 GFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 32/95 (33.68%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  254 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 538
            G+H RTE NK++  +G+      +     D  E +ITP GGFPHYG+V  D+L+I+G   G  KR++ +R ++     +  +E  ++ ++   SK
Sbjct:  257 GFHHRTEFNKRLIAIGE------NGKLVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 31/95 (32.63%), Postives = 56/95 (58.95%), Query Frame = -3
Query:  254 GYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 538
            G+H RTE NK++  +G+     +  +   ++ E +ITP GGFPHYG++  D+L+I+G   G  KR++ +R ++     +  +E  ++ +I   SK
Sbjct:  257 GFHHRTEFNKRLIAIGE-----NGKLKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346          
The following BLAST results are available for this feature:
BLAST of CN181745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL3_NEUCR1.263e-3056.5260S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_ASPFU1.263e-3055.6560S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3B_SCHPO1.263e-3056.5260S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO1.263e-3056.5260S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_DEBHA4.799e-3056.0360S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_METJA1.551e-1240.2150S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_UNCMA1.005e-1136.0850S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_META31.005e-1138.7850S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_PYRKO1.715e-1133.6850S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_THEON2.239e-1132.6350S ribosomal protein L3P OS=Thermococcus onnurine... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181745 ID=CN181745; Name=CN181745; organism=Citrus sinensis; type=EST; length=543bp
TAAAGCCAAAAATACCGTAAGATGTATTAACGCGCAAAAAAGAAACCATG
CACAAATGAAGTTTCAAAGAACTGCCAATGTAGCCATAGCCATATTAATT
CAAAATAGAGACTAGAATGACCAACAATCTTAGATGTTCAAAACTACCCT
GAAACCAAAGGCAATCTCTTTTTCAACTTGGCCAAAATCAAGCCTTGAGC
CTTCCATAGTACTTGGCCTTCTCCTGAGTTCTCTGGAACCGACCATGGCC
GAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAATGCAA
GCCTAGACGTCTGCTTCAGTAGGGACTGCCTCAAGGTCACAACACGCTTC
TTAGGTCCAACACAGCATCCCTTGATCAGCAGGTAATCTTCATTGACTAC
ACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGTCCTGT
CAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAAGCTTG
TAAATTTTCTTGTTCATCTCTGTACGGGGATGGTAGCCGTTCT
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