CN181741

Overview
NameCN181741
Unique NameCN181741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.449e-17
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  425 ENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 763
            + C  LQGF + H              + ++  +Y  +  L F+++P+P+VS  VVEPYN+ L+ H  +E +D   ++DNEA+YDIC R L +  P++ +LN LI   +S +T
Sbjct:    2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEQSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSIT 114          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBGN_GUITH (Tubulin gamma chain, nucleomorph OS=Guillardia theta GN=tubG PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.699e-15
Identity = 58/236 (24.58%), Postives = 105/236 (44.49%), Query Frame = 2
Query:   59 EILHIQGGQCGNQIGSKFWEVVCAEHGI---DPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVV-EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMS 754
            EIL +Q G+ G   G++FW+ +  E  +      GK     D      NV++ E++   ++PR ++ DL     + +    Y +++  +         GN+W KG+Y EG    + V +++RK  E  + ++ F V +              I  IR  YP   +   S+FP    +  V  +PYN+ LS+       D  +   N A+ ++  +    +  SF  +N++I  T+S
Sbjct:    4 EILTLQVGKTGILTGNEFWKSLVREKNLLSDFSLGKNSPTND------NVFFEESNESFFIPRTIIFDLSERDFNYIMKSNYSKMYDKNRHFILNKNTGNSWLKGYY-EGISNCNLVDNILRKRIEKMNSVKYFNVFNSINGGTGAGLSSYLIEYIRNNYPKSFINCCSIFPDLYGNTQVTFQPYNSVLSIAWQGLYCDSNIFFQNHAIENLLTKNQINNELSFRKVNYIIGKTIS 232          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 2
Query:  665 EALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            EALYDICFRTLKL TP+FGDLNHLISATMSGVTCC
Sbjct:    1 EALYDICFRTLKLVTPTFGDLNHLISATMSGVTCC 35          
The following BLAST results are available for this feature:
BLAST of CN181741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBA8_CHICK5.449e-1735.40Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBGN_GUITH8.699e-1524.58Tubulin gamma chain, nucleomorph OS=Guillardia the... [more]
TBB3_ANEPH1.814e-1294.29Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181741 ID=CN181741; Name=CN181741; organism=Citrus sinensis; type=EST; length=771bp
GTGAAAATATCCTCTGCAAATCTCGCTAATCAAGAAACCCCAAAAGAAGA
AAATGCGTGAAATCCTTCACATTCAAGGGGGCCAATGCGGGAACCAAATC
GGATCCAAGTTCTGGGAAGTGGTTTGCGCCGAGCACGGTATAGACCCGAC
CGGAAAGTATCAAGGGGATACCGATTTGCAGCTTGAGAGGATTAATGTGT
ATTACAACGAGGCAAGTTGCGGGAGATACGTGCCTAGGGCCGTGCTCATG
GATCTTGAACCTGGGACCATGGATAGCGTCAGGTCTGGTCCGTACGGTCA
GGTTTTTAGGCCCGACAATTTTGTCTTTGGCCAGTCCGGCGCCGGAAACA
ACTGGGCGAAGGGGCATTATACTGAAGGAGCTGAGCTGATTGACTCTGTG
CTTGATGTTGTTCGTAAAGAAGCCGAGAACTGCGATTGCTTGCAGGGATT
TCAGGTGTGCCATTCTCTGGGAGGAGGGACAGGTTCCGGGATGGGAACTT
TGTTGATATCAAAGATAAGAGAGGAATACCCGGATAGAATGATGCTTACT
TTCTCAGTTTTCCCATCTCCTAAGGTCTCTGATACTGTTGTTGAGCCTTA
CAACGCTACTCTCTCTGTACATCAGCTAGTTGAAAATGCAGATGAGTGTA
TGGTTCTTGATAATGAAGCCCTTTACGACATCTGTTTCCGCACTCTCAAA
CTCAGCACTCCAAGCTTTGGTGATCTGAATCATTTGATATCTGCTACAAT
GTCTGGAGTTACCTGTTGTTT
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