CN181741

Overview
NameCN181741
Unique NameCN181741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 429.869 bits (1104), Expect = 7.634e-120
Identity = 205/239 (85.77%), Postives = 218/239 (91.21%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREILHIQGGQCGNQIG+KFWEV+C EHGID TG+Y GD+ LQLERI+VY+NEAS G+YVPRAVLMDLEPGTMDS+RSGP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEN DCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ P+FGDLNHLISATMSGVTCC
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_POLAG (Tubulin beta chain OS=Polytomella agilis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 3.789e-119
Identity = 204/239 (85.36%), Postives = 216/239 (90.38%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+HIQGGQCGNQIG+KFWEVV  EHGIDPTG   GD+DLQLERINVY+NEA+  RYVPRA+LMDLEPGTMDSVRSGPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQVCH              ISKIREEYPDRMMLTFSV PSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TP+FGDLNHLISA MSG+TCC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTALGDSDLQLERINVYFNEATGSRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPTFGDLNHLISAVMSGITCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 4.948e-119
Identity = 203/239 (84.94%), Postives = 214/239 (89.54%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG Y G +  QLERINVYYNEA  GRYVPRAVLMDLEPGTM+S+R+GP+G +FRPDNFV+GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ PSFGDLNHLISATMSGVTCC
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCYSGVSPQQLERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 422.935 bits (1086), Expect = 9.332e-118
Identity = 202/241 (83.82%), Postives = 215/241 (89.21%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTD--LQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREILHIQGGQCGNQIG+KFWEV+C EH +D TG+Y G +   L+LERINVYYNEA  GRYVPRAVLMDLEPGTM+S+R+GP+G +FRPDNFV+GQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH              ISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ PSFGDLNHLISATMSGVTCC
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHCVDSTGRYSGTSSQQLELERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGVTCC 241          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 421.009 bits (1081), Expect = 3.546e-117
Identity = 197/239 (82.43%), Postives = 214/239 (89.54%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+HIQ GQCGNQIG+KFWEV+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTMDSVR+GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDRMM+TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDICFRTLKL+TP+FGDLNHL+S  MSGVTCC
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDICFRTLKLTTPTFGDLNHLVSIVMSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_TETTH (Tubulin beta chain OS=Tetrahymena thermophila GN=BTU1 PE=1 SV=1)

HSP 1 Score: 420.624 bits (1080), Expect = 4.632e-117
Identity = 197/239 (82.43%), Postives = 215/239 (89.96%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+HIQGGQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRTLKL+TP++GDLNHL+SA MSGVTCC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB1_PARTE (Tubulin beta chain OS=Paramecium tetraurelia GN=bPT2 PE=3 SV=1)

HSP 1 Score: 420.624 bits (1080), Expect = 4.632e-117
Identity = 197/239 (82.43%), Postives = 215/239 (89.96%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+HIQGGQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRTLKL+TP++GDLNHL+SA MSGVTCC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 419.468 bits (1077), Expect = 1.032e-116
Identity = 195/239 (81.59%), Postives = 215/239 (89.96%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+H+QGGQCGNQIG+KFWEV+  EHG+DPTG Y GD+DLQLERINVYYNEA+ GRYVPRAVLMDLEPGTMDSVR+GPYGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              I+K+REEYPDRMM T+SVFPSPKVSDTVVEPYNATLSVHQLVENADE MV+DNEALYDICFRTLKL+TP++GDLNHL+SA +SGVTCC
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSMGGGTGSGMGTLLIAKVREEYPDRMMCTYSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVIDNEALYDICFRTLKLTTPTYGDLNHLVSACISGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB_TETPY (Tubulin beta chain OS=Tetrahymena pyriformis GN=BETA-TT1 PE=3 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 1.760e-116
Identity = 196/239 (82.01%), Postives = 215/239 (89.96%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREI+HIQGGQCGNQIG+KFWEV+  EHGIDPTG Y GD+DLQLERINVYYNEA+ GRYVPRA+LMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAE CDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVENADECMV+DNEALYDICFRTLKL+TP++G+LNHL+SA MSGVTCC
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGNLNHLVSAAMSGVTCC 239          
BLAST of CN181741 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 1.760e-116
Identity = 199/239 (83.26%), Postives = 211/239 (88.28%), Query Frame = 2
Query:   53 MREILHIQGGQCGNQIGSKFWEVVCAEHGIDPTGKYQGDTDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQVFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCC 769
            MREILH+Q GQCGNQIG KFWEV+C EHGID TG Y G+  LQLER+NVYYNEAS GRYVPRAVLMDLEPGTMDS+RSGP+G++FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQ+CH              ISKIREEYPDRMMLTFSVF  P+ SDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+ PSFGDLNHLIS TMSGVTCC
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGNFHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFAVPEGSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCC 239          
The following BLAST results are available for this feature:
BLAST of CN181741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 423
Match NameE-valueIdentityDescription
TBB4_ARATH7.634e-12085.77Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_POLAG3.789e-11985.36Tubulin beta chain OS=Polytomella agilis GN=TUBB1 ... [more]
TBB3_MAIZE4.948e-11984.94Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB4_MAIZE9.332e-11883.82Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB_NAEGR3.546e-11782.43Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB_TETTH4.632e-11782.43Tubulin beta chain OS=Tetrahymena thermophila GN=B... [more]
TBB1_PARTE4.632e-11782.43Tubulin beta chain OS=Paramecium tetraurelia GN=bP... [more]
TBB1_CYAPA1.032e-11681.59Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB_TETPY1.760e-11682.01Tubulin beta chain OS=Tetrahymena pyriformis GN=BE... [more]
TBB1_SOYBN1.760e-11683.26Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001G13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181741 ID=CN181741; Name=CN181741; organism=Citrus sinensis; type=EST; length=771bp
GTGAAAATATCCTCTGCAAATCTCGCTAATCAAGAAACCCCAAAAGAAGA
AAATGCGTGAAATCCTTCACATTCAAGGGGGCCAATGCGGGAACCAAATC
GGATCCAAGTTCTGGGAAGTGGTTTGCGCCGAGCACGGTATAGACCCGAC
CGGAAAGTATCAAGGGGATACCGATTTGCAGCTTGAGAGGATTAATGTGT
ATTACAACGAGGCAAGTTGCGGGAGATACGTGCCTAGGGCCGTGCTCATG
GATCTTGAACCTGGGACCATGGATAGCGTCAGGTCTGGTCCGTACGGTCA
GGTTTTTAGGCCCGACAATTTTGTCTTTGGCCAGTCCGGCGCCGGAAACA
ACTGGGCGAAGGGGCATTATACTGAAGGAGCTGAGCTGATTGACTCTGTG
CTTGATGTTGTTCGTAAAGAAGCCGAGAACTGCGATTGCTTGCAGGGATT
TCAGGTGTGCCATTCTCTGGGAGGAGGGACAGGTTCCGGGATGGGAACTT
TGTTGATATCAAAGATAAGAGAGGAATACCCGGATAGAATGATGCTTACT
TTCTCAGTTTTCCCATCTCCTAAGGTCTCTGATACTGTTGTTGAGCCTTA
CAACGCTACTCTCTCTGTACATCAGCTAGTTGAAAATGCAGATGAGTGTA
TGGTTCTTGATAATGAAGCCCTTTACGACATCTGTTTCCGCACTCTCAAA
CTCAGCACTCCAAGCTTTGGTGATCTGAATCATTTGATATCTGCTACAAT
GTCTGGAGTTACCTGTTGTTT
back to top