CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_RICTY (Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi GN=sodB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.397e-15
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = -2
Query:  213 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 488
            QFGSGW W+VY                   +  L ++KT NA  P+V    P+L  DVWEHAYY+D++N+R DYI +F+  +++W+ V   L
Sbjct:  134 QFGSGWVWVVYN------------------NNKLQIIKTSNADTPIVNLMKPILVCDVWEHAYYIDYRNKRSDYIDIFISHMINWKFVEDNL 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +  TPN  +PL    +P+L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V++    AK
Sbjct:  126 RFGSGWAWLVVN------------------NGKLEITSTPNQDSPLSEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVARLYSEAK 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STAES (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=sodA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM_STAEQ (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NP+    +P+L +DVWEHAYYL +QN+RPDYI+ F + +V+WE V++   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYINAFWN-VVNWEKVNELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = -2
Query:  201 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAK 488
            +FGSGWAWLV                    +  L +V TPN  NPL    +P+L +DVWEHAYYL +QN+RPDYI  F + +V+WE V +   + K
Sbjct:  123 RFGSGWAWLVVN------------------NGQLEIVTTPNQDNPLTEGKTPILGLDVWEHAYYLKYQNKRPDYIGAFWN-VVNWEKVDELYNATK 199          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODF_RICTY5.397e-1539.13Superoxide dismutase [Mn/Fe] OS=Rickettsia typhi G... [more]
SODM_BACSU7.049e-1542.71Superoxide dismutase [Mn] OS=Bacillus subtilis GN=... [more]
SODM_STAES9.206e-1541.67Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAEQ9.206e-1541.67Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM1_STAAW9.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS9.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR9.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN9.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM9.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC9.206e-1542.71Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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