CN181728

Overview
NameCN181728
Unique NameCN181728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_PHYIN (Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 4.792e-63
Identity = 117/128 (91.41%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE+ EAF+VFDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELRHIMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 4.792e-63
Identity = 119/128 (92.97%), Postives = 125/128 (97.66%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVD+DGNGTIDFPEFL+LMARKMKDTD+EEEL EAF+VFD+D NGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVK+MMAK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDSDGNGTIDFPEFLSLMARKMKDTDTEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMMAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_EPIAK (Calmodulin OS=Epinephelus akaara GN=calm PE=2 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 6.258e-63
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQIMTAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_SHEEP (Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_RAT (Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
[Close]
BLAST of CN181728 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 1.067e-62
Identity = 116/128 (90.62%), Postives = 124/128 (96.88%), Query Frame = -2 
Query:  182 KDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 565
            KDGDG ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   22 KDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of CN181728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 438
Match NameE-valueIdentityDescription
CALM_PHYIN4.792e-6391.41Calmodulin OS=Phytophthora infestans GN=CMD1 PE=3 ... [more]
CALM_HETTR4.792e-6392.97Calmodulin OS=Heterocapsa triquetra PE=2 SV=1[more]
CALM_EPIAK6.258e-6390.63Calmodulin OS=Epinephelus akaara GN=calm PE=2 SV=3[more]
CALM_XENLA1.067e-6290.63Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2[more]
CALM_TORCA1.067e-6290.63Calmodulin OS=Torpedo californica PE=1 SV=2[more]
CALM_SHEEP1.067e-6290.63Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3[more]
CALM_RAT1.067e-6290.63Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2[more]
CALM_RABIT1.067e-6290.63Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S... [more]
CALM_PONAB1.067e-6290.63Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3[more]
CALM_PERFV1.067e-6290.63Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G07_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181728 ID=CN181728; Name=CN181728; organism=Citrus sinensis; type=EST; length=566bp
AAAAAACTGGAAAAGTTGCTCCAGTCACAAGACAAATTGAAGCAGGAGAC
AACATGCTTCCTTTAGCTTGACCTCAGAGTTATCAAATTAAAATTTATAA
AAAAGGAAACTAGGGAACCAATTATATTAATCAACCAATTTCTTCTTTTT
CCAGGAAGTTTTGGTTGGGTGGAGTCACTTACTTAGCCATCATAACCTTG
ACAAATTCCTCATAATTTATCTGGCCATCACCATCGACATCAGCTTCCCT
TATCATCTCATCGACTTCCTCATCAGTAAGCTTCTCCCCAAGGTTTGTCA
TCACATGACGCAGTTCAGCAGCTGAAATGAAACCATTCTGATCCTTGTCG
AAAACCCGGAAGGCCTCTTTCAGCTCCTCCTCAGAGTCGGTATCCTTCAT
CTTCCTGGCCATGAGGTTTAGGAATTCAGGAAAATCAATAGTTCCATTAC
CATCAGCATCCACTTCATTGATCATGTCCTGGAGCTCAGCCTCAGTGGGG
TTCTGACCCAGTGACCTCATAACAGTGCCAAGCTCCTTGGTGGTAATGCA
ACCGTCGCCGTCCTTG
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