CN181724

Overview
NameCN181724
Unique NameCN181724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_MOUSE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.858e-22
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            VLCNLKP  MRG+ S  M+LCAS    + +VE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  422 VLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGFVSCKSLKGGNI 527          

HSP 2 Score: 35.8094 bits (81), Expect = 1.858e-22
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605
            RTVVSGLV+ +P EE+Q+R+  VLC+L+ +
Sbjct:  400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_HUMAN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4)

HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-22
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            VLCNLKP  MRG++S  M+LCAS    N +VE ++PP  +  GE V   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  422 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 527          

HSP 2 Score: 35.8094 bits (81), Expect = 2.417e-22
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605
            RTVVSGLV+ +P EE+Q+R+  VLC+L+ +
Sbjct:  400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_RAT (Tyrosyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.145e-22
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            VLCNLKP  MRG+ S  M+LCAS    + +VE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + + VA +K   F T  G  +  S++ G+I
Sbjct:  422 VLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNI 527          

HSP 2 Score: 35.8094 bits (81), Expect = 3.145e-22
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605
            RTVVSGLV+ +P EE+Q+R+  VLC+L+ +
Sbjct:  400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_XENLA (Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.250e-20
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTSDNTK-VELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            +LCNLKP  MRGI+S  M+LCAST    K VE ++PP  +  GER+   G+E GEP+  L PKKKV+E +QVD   + +L A +K   F T  G  T  +++ GSI
Sbjct:  422 LLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSI 527          

HSP 2 Score: 26.9498 bits (58), Expect = 1.250e-20
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605
            R VVSGLV+++P +++  R V  LC+L+ +
Sbjct:  400 RCVVSGLVQYVPSDQLLGRSVVLLCNLKPQ 429          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_XENTR (Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.626e-20
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTSDNTK-VELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            +LCNLKP  MRGI+S  M+LCAST    K VE ++PP  +  GER+   G+E GEP+  L PKKKV+E +QVD   + +L A +K   F T  G  T  +++ GSI
Sbjct:  422 LLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSI 527          

HSP 2 Score: 26.9498 bits (58), Expect = 1.626e-20
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605
            R VVSGLV+++P +++  R V  LC+L+ +
Sbjct:  400 RCVVSGLVQYVPSDQLLGRSVVLLCNLKPQ 429          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: YLF4_SCHPO (Uncharacterized tRNA-binding protein C30C2.04 OS=Schizosaccharomyces pombe GN=SPAC30C2.04 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = -1
Query:  227 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKD--------IPFTTSAGICTVSSIQSGSI 568
            L++ ++    V+ NLKPV MR +KS AMV CAS+ D + VE V PP++A+IG+R+ F GF+  EP+  LNPK+K+WE +Q    +  +L+  YKD        +      G C   ++ +G++
Sbjct:  327 LEQMQQRKVIVVANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGFDTEEPEAQLNPKRKIWEAIQPGFTSGEDLICGYKDESGLHRLFVKGKKDLGFCKAQTVVNGTL 449          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: G4P1_YEAST (GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae GN=ARC1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18
Identity = 51/95 (53.68%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  287 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGE-PDDVLNPKKKVWETVQVDLHTNTELVACYKD 568
            L   +  +  V+CNLKPV MRGIKS AMVLC S  D  KVE VEPPK +K G++V F GF  E P   LNPKKK+WE +Q    TN  L   +KD
Sbjct:  254 LDAMQERYVVVVCNLKPVNMRGIKSTAMVLCGSNDD--KVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTNDGLEVIFKD 346          
The following BLAST results are available for this feature:
BLAST of CN181724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SYYC_MOUSE1.858e-2244.34Tyrosyl-tRNA synthetase, cytoplasmic OS=Mus muscul... [more]
SYYC_HUMAN2.417e-2244.34Tyrosyl-tRNA synthetase, cytoplasmic OS=Homo sapie... [more]
SYYC_RAT3.145e-2244.34Tyrosyl-tRNA synthetase, cytoplasmic OS=Rattus nor... [more]
SYYC_XENLA1.250e-2047.17Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus la... [more]
SYYC_XENTR1.626e-2047.17Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus tr... [more]
YLF4_SCHPO1.436e-1838.21Uncharacterized tRNA-binding protein C30C2.04 OS=S... [more]
G4P1_YEAST1.436e-1853.68GU4 nucleic-binding protein 1 OS=Saccharomyces cer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181724 ID=CN181724; Name=CN181724; organism=Citrus sinensis; type=EST; length=607bp
AATTCAACTGCTCATTGCTCAAGGCAATTGGGTTTTCTTCTAATGAGGGG
AAAAGGTAACACTAATGAAGCCACGACATAATCTAGTCTACTACTGACAC
AAAATTCTTGTCCACATACAACATTTCACACAACGAGAAAAAGTCACTAG
GATAAAAAAGCAAAGTTAACACAATCAGAAGATTAGGAATTCTCGCTTTC
CAATGATTGAAGAAGTCGAGCTACCGTATAGACCCACTTTGAATGGAGGA
AACAGTGCAAATACCAGCTGATGTCGTGAAAGGAATATCTTTATAGCAGG
CCACCAGCTCGGTGTTAGTGTGTAAATCCACTTGCACTGTCTCCCAAACC
TTCTTCTTAGGGTTTAACACATCATCAGGCTCGCCTTCAAACCCAGGAAA
TGCAACTCTTTCTCCAATTTTTGCAGATTTTGGTGGCTCAACCAATTCAA
CCTTGGTGTTATCACTGGTTGAAGCACAAAGAACCATTGCATGTGATTTG
ATTCCCCTCATTGCTACTGGTTTCAGATTGCAAAGAACACAGGACCATTC
TCTCCTGCATCTCTTCAAGAGGTATATGCTTGACAAGGCCACTAACTACT
GTTCGAG
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