CN181724
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_MOUSE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3) HSP 1 Score: 89.3521 bits (220), Expect = 1.858e-22 Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 VLCNLKP MRG+ S M+LCAS + +VE ++PP + GERV G+E G+PD+ L PKKKV+E +Q D + E +A +K F T G + S++ G+I Sbjct: 422 VLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGFVSCKSLKGGNI 527 HSP 2 Score: 35.8094 bits (81), Expect = 1.858e-22 Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605 RTVVSGLV+ +P EE+Q+R+ VLC+L+ + Sbjct: 400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_HUMAN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4) HSP 1 Score: 88.9669 bits (219), Expect = 2.417e-22 Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 VLCNLKP MRG++S M+LCAS N +VE ++PP + GE V G+E G+PD+ L PKKKV+E +Q D + E +A +K F T G + S++ G+I Sbjct: 422 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 527 HSP 2 Score: 35.8094 bits (81), Expect = 2.417e-22 Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605 RTVVSGLV+ +P EE+Q+R+ VLC+L+ + Sbjct: 400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_RAT (Tyrosyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 3.145e-22 Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 VLCNLKP MRG+ S M+LCAS + +VE ++PP + GERV G+E G+PD+ L PKKKV+E +Q D + + VA +K F T G + S++ G+I Sbjct: 422 VLCNLKPQKMRGVDSQGMLLCASVEGVSRQVEPLDPPAGSAPGERVFVQGYEKGQPDEELKPKKKVFEKLQADFKISDDCVAQWKQTNFMTKLGFVSCKSLKGGNI 527 HSP 2 Score: 35.8094 bits (81), Expect = 3.145e-22 Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605 RTVVSGLV+ +P EE+Q+R+ VLC+L+ + Sbjct: 400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_XENLA (Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.250e-20 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTSDNTK-VELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 +LCNLKP MRGI+S M+LCAST K VE ++PP + GER+ G+E GEP+ L PKKKV+E +QVD + +L A +K F T G T +++ GSI Sbjct: 422 LLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPSGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSI 527 HSP 2 Score: 26.9498 bits (58), Expect = 1.250e-20 Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605 R VVSGLV+++P +++ R V LC+L+ + Sbjct: 400 RCVVSGLVQYVPSDQLLGRSVVLLCNLKPQ 429
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_XENTR (Tyrosyl-tRNA synthetase, cytoplasmic OS=Xenopus tropicalis GN=yars PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.626e-20 Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = -1 Query: 227 VLCNLKPVAMRGIKSHAMVLCASTSDNTK-VELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538 +LCNLKP MRGI+S M+LCAST K VE ++PP + GER+ G+E GEP+ L PKKKV+E +QVD + +L A +K F T G T +++ GSI Sbjct: 422 LLCNLKPQKMRGIESQGMLLCASTEGEQKQVEPLDPPTGSAPGERIYIEGYENGEPEGELKPKKKVFEKLQVDFRISDDLCAQWKGKNFLTKLGSVTCKTLRGGSI 527 HSP 2 Score: 26.9498 bits (58), Expect = 1.626e-20 Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = -3 Query: 522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605 R VVSGLV+++P +++ R V LC+L+ + Sbjct: 400 RCVVSGLVQYVPSDQLLGRSVVLLCNLKPQ 429
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: YLF4_SCHPO (Uncharacterized tRNA-binding protein C30C2.04 OS=Schizosaccharomyces pombe GN=SPAC30C2.04 PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18 Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = -1 Query: 227 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKD--------IPFTTSAGICTVSSIQSGSI 568 L++ ++ V+ NLKPV MR +KS AMV CAS+ D + VE V PP++A+IG+R+ F GF+ EP+ LNPK+K+WE +Q + +L+ YKD + G C ++ +G++ Sbjct: 327 LEQMQQRKVIVVANLKPVNMRSVKSQAMVFCASSPDKSVVEFVLPPENAEIGDRLTFEGFDTEEPEAQLNPKRKIWEAIQPGFTSGEDLICGYKDESGLHRLFVKGKKDLGFCKAQTVVNGTL 449
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: G4P1_YEAST (GU4 nucleic-binding protein 1 OS=Saccharomyces cerevisiae GN=ARC1 PE=1 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-18 Identity = 51/95 (53.68%), Postives = 60/95 (63.16%), Query Frame = -1 Query: 287 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGE-PDDVLNPKKKVWETVQVDLHTNTELVACYKD 568 L + + V+CNLKPV MRGIKS AMVLC S D KVE VEPPK +K G++V F GF E P LNPKKK+WE +Q TN L +KD Sbjct: 254 LDAMQERYVVVVCNLKPVNMRGIKSTAMVLCGSNDD--KVEFVEPPKDSKAGDKVFFEGFGDEAPMKQLNPKKKIWEHLQPHFTTNDGLEVIFKD 346 The following BLAST results are available for this feature:
BLAST of CN181724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181724 ID=CN181724; Name=CN181724; organism=Citrus sinensis; type=EST; length=607bpback to top |