CN181697

Overview
NameCN181697
Unique NameCN181697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS2_IPOBA (Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.178e-40
Identity = 81/119 (68.07%), Postives = 87/119 (73.11%), Query Frame = -1
Query:  155 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSVPFK 511
            P ++S NIEK LFE F PLGI DWNS+FWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILDEMRK          GEGL+WGVLFGFGPG T+ETVVLHSVP K
Sbjct:  271 PSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVPIK 389          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.538e-40
Identity = 83/116 (71.55%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEK+L E F PLGI D+NSIFWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILD+MRK  +E      GEGLDWGVLFGFGPG TVETVVL SV
Sbjct:  271 PGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSV 386          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS3_SOYBN (Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.538e-40
Identity = 83/116 (71.55%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEK+L E F PLGI D+NSIFWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILD+MRK  +E      GEGLDWGVLFGFGPG TVETVVL SV
Sbjct:  271 PGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSV 386          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS1_SOYBN (Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.538e-40
Identity = 83/116 (71.55%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEK+L E F PLGI D+NSIFWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILD+MRK  +E      GEGLDWGVLFGFGPG TVETVVL SV
Sbjct:  271 PGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSV 386          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40
Identity = 81/116 (69.83%), Postives = 89/116 (76.72%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNIEKSL E   P+GI DWNS+FWIAHPGGPAIL QVE          +A RQVLS+YGNMS ACVLFILDE+R+   E+     GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  115 PGLISKNIEKSLNEALKPIGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLEATRQVLSDYGNMSSACVLFILDEVRRKSAEKGLETTGEGLEWGVLFGFGPGLTVETVVLHSV 230          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40
Identity = 83/116 (71.55%), Postives = 88/116 (75.86%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PGLISKNI K+L E F PLGI DWNSIFWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILDEMRK    +  +  GEGL+WGVLFGFGPG TVETVVLHSV
Sbjct:  272 PGLISKNIGKALDEAFQPLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASARDGLSTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS3_TRISU (Chalcone synthase 3 OS=Trifolium subterraneum GN=CHS3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40
Identity = 81/116 (69.83%), Postives = 90/116 (77.59%), Query Frame = -1
Query:  164 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSV 511
            PG++SKNI+K+L E F PLGI D+NSIFWIAHPGGPAIL QVE          KA R+VLSEYGNMS ACVLFILDEMRK   ++     GEGLDWGVLFGFGPG T+ETVVLHSV
Sbjct:  272 PGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSTKDGLKTTGEGLDWGVLFGFGPGLTIETVVLHSV 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: CHS3_IPOBA (Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.009e-40
Identity = 80/117 (68.38%), Postives = 87/117 (74.36%), Query Frame = -1
Query:  161 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSVP 511
            P ++S NIEK LFE F PLGI DWNS+FWIAHPGGPAIL QVE          +A R VLSEYGNMS ACVLFILDEMRK    +     GEGL+WGVLFGFGPG T+ETVVLHSVP
Sbjct:  271 PSVVSNNIEKCLFEAFNPLGISDWNSVFWIAHPGGPAILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNDGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVP 387          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: THS2_VITVI (Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT00004047001 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 3.427e-40
Identity = 80/117 (68.38%), Postives = 89/117 (76.07%), Query Frame = -1
Query:  161 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSVP 511
            P LIS+NIEK L + F PLGI DWNS+FWIAHPGGPAIL  VE          +A R VLSEYGNMS ACVLFILDEMRK  ++  +A  GEGLDWGVLFGFGPG T+ETVVLHS+P
Sbjct:  272 PTLISENIEKCLTQAFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGERATTGEGLDWGVLFGFGPGLTIETVVLHSIP 388          
BLAST of CN181697 vs. ExPASy Swiss-Prot
Match: THS5_VITVI (Stilbene synthase 5 OS=Vitis vinifera GN=GSVIVT00007357001 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.476e-40
Identity = 81/117 (69.23%), Postives = 89/117 (76.07%), Query Frame = -1
Query:  161 PGLISKNIEKSLFEGFAPLGIRDWNSIFWIAHPGGPAILAQVEFXXXXXXXXXKAPRQVLSEYGNMSRACVLFILDEMRKNFVEEAKAPPGEGLDWGVLFGFGPGFTVETVVLHSVP 511
            P LIS+NIEK L + F PLGI +WNS+FWIAHPGGPAIL  VE          +A R VLSEYGNMS ACVLFILDEMRK  ++  KA  GEGLDWGVLFGFGPG T+ETVVLHSVP
Sbjct:  272 PTLISENIEKCLSQAFDPLGISNWNSLFWIAHPGGPAILDAVEAKLNLEKKKLEATRHVLSEYGNMSSACVLFILDEMRKKSLKGEKATTGEGLDWGVLFGFGPGLTIETVVLHSVP 388          
The following BLAST results are available for this feature:
BLAST of CN181697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHS2_IPOBA1.178e-4068.07Chalcone synthase LF2 OS=Ipomoea batatas GN=CHS-LF... [more]
CHS5_SOYBN1.538e-4071.55Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHS3_SOYBN1.538e-4071.55Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV... [more]
CHS1_SOYBN1.538e-4071.55Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV... [more]
CHSY_MALDO2.009e-4069.83Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
CHSY_CATRO2.009e-4071.55Chalcone synthase OS=Catharanthus roseus GN=CHS PE... [more]
CHS3_TRISU2.009e-4069.83Chalcone synthase 3 OS=Trifolium subterraneum GN=C... [more]
CHS3_IPOBA2.009e-4068.38Chalcone synthase LF3 OS=Ipomoea batatas GN=CHS-LF... [more]
THS2_VITVI3.427e-4068.38Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT000... [more]
THS5_VITVI4.476e-4069.23Stilbene synthase 5 OS=Vitis vinifera GN=GSVIVT000... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F14_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181697 ID=CN181697; Name=CN181697; organism=Citrus sinensis; type=EST; length=511bp
TTTTTTTTTTTTTTTTTAAAAAAAAAGGCACGATGCCTTAAACTCAATTG
ACAAAACTAAACCTTCCCACGATCAACCAATAACTCAACTGGGAAAGCAT
ACAACATAAAGTTACTGAACTACTAAACATACTGGTGGAGTTCTCACTTC
AAGCTTTGAAGGGGACACTGTGCAGCACAACGGTCTCCACGGTGAACCCC
GGCCCGAACCCGAACAGCACACCCCAATCAAGCCCTTCCCCGGGGGGGGC
TTTCGCTTCCTCAACAAAATTCTTTCTCATCTCGTCAAGGATGAACAAGA
CACAAGCCCTTGACATGTTACCGTACTCACTCAACACTTGACGTGGGGCC
TTCAGCTTCTCCCCTTTGAGGCCCAATTTAAACTCCACTTGGGCCAAAAT
TGCGGGCCCCCCGGGGTGAGCGATCCAAAATATCGAGTTCCAGTCCCTGA
TGCCAAGCGGGGCGAACCCTTCAAAAAGGCTTTTCTCTATATTCTTTGAA
ATCAAGCCGGG
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