CN188671

Overview
NameCN188671
Unique NameCN188671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GSTF1_MAIZE (Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE=1 SV=4)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 70/157 (44.59%), Postives = 92/157 (58.60%), Query Frame = -2
Query:  164 QDGDFILYESRAIMRYYAEKYRSQGTELLGK-TIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDDQSVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHYLVGPMGRQHMIRARKHVSAWWDDISTRPPWKKVLELCK 631
            QDGD  L+ESRAI +Y A K +    ELL +  +EE  +V+ W+EVEA+ Y  A+  +  Q+L S   G   D + V E+ EKL K L+VYE RL+K KYLAGDF SLADL+ +  T  L        ++ A  HV AWW  +  RP  +KV  L K
Sbjct:   59 QDGDLYLFESRAICKYAARKNKP---ELLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFA-TPYASVLDAYPHVKAWWSGLMERPSVQKVAALMK 211          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 62/152 (40.79%), Postives = 93/152 (61.18%), Query Frame = -2
Query:  176 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDDQSVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHYLVGPMGRQHMIRARKHVSAWWDDISTRPPWKKVL 631
            +DGDF ++ESRAI +Y A ++  +G  LL  T ++  ++   +E+E+H ++P   +L  + +    +G   D   V+E + KL K LDVYE RL +SKYLA D F+L DL  IP   YL+G   ++ +   R HVSAW  DI++RP  +KVL
Sbjct:   59 EDGDFKIFESRAITQYIAHEFSDKGNNLLS-TGKDMAIIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADITSRPSAQKVL 208          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = -2
Query:  176 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDDQSVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHYLVGPMGRQHMIRARKHVSAWWDDISTRPPWKKVL 631
            +DGDF L+ESRAI +Y A  Y  +G +L+    ++   +   +E+E+H ++P   +L  + +    +G   D   V+E + KL K LDVYE RL +SKYLA D F+L DL  IP   YL+G   ++ +   R HVSAW  DI++RP  KKVL
Sbjct:   59 EDGDFKLFESRAITQYIAHFYSDKGNQLVSLGSKDIAGIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADITSRPSAKKVL 209          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GSTF1_TOBAC (Glutathione S-transferase PARB OS=Nicotiana tabacum GN=PARB PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.837e-26
Identity = 63/153 (41.18%), Postives = 90/153 (58.82%), Query Frame = -2
Query:  173 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDDQSVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHYLVGPMGRQHMIRARKHVSAWWDDISTRPPWKKVLE 631
            +DGD  L+ESRAI +Y A  Y   G +L+ +  ++   +  W+EVE   + P   +LT +L      G   DD +VKES+ +L K LD+YE +L++SKYL GD F+L DL  IP  +YL+    ++ +  +R  VSAW  DI  RP W K LE
Sbjct:   58 EDGDLKLFESRAITQYIAHVYADNGYQLILQDPKKMPSMSVWMEVEGQKFEPPATKLTWELGIKPIIGMTTDDAAVKESEAQLSKVLDIYETQLAESKYLGGDSFTLVDLHHIPNIYYLMSSKVKE-VFDSRPRVSAWCADILARPAWVKGLE 209          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GST16_ARATH (Glutathione S-transferase 16 OS=Arabidopsis thaliana GN=GST16 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.941e-25
Identity = 63/155 (40.65%), Postives = 91/155 (58.71%), Query Frame = -2
Query:  176 QDGDFILYESRAIMRYYAEKYRSQGTELL---GKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDDQSVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHYLVGPMGRQHMIRARKHVSAWWDDISTRPPWKKVL 631
            +DGD  L+ESRAI +Y A +Y +QGT LL    K I +  ++   ++VEAH ++P   +L  + +F   +G   D   V E + KL K LDVYE RL + KYLAG+ F+L DL  IP   YL+G   ++ +   R  V+ W  +I+ RP  +KVL
Sbjct:   59 EDGDLKLFESRAITQYIAHRYENQGTNLLPADSKNIAQYAIMSIGIQVEAHQFDPVASKLAWEQVFKFNYGLNTDQAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPVIQYLLGTPTKK-LFTERPRVNEWVAEITKRPASEKVL 212          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GSTF4_ARATH (Glutathione S-transferase PM24 OS=Arabidopsis thaliana GN=PM24.1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 6.453e-25
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = -2
Query:  179 QDGDFILYESRAIMRYYAEKYRSQGTELL---GKTIEERGLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDDQSVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHYLVGPMGRQHMIRARKHVSAWWDDISTRPPWKKV 631
            +DGD  L+ESRAI +Y A +Y +QGT LL    K I +  ++   ++VE H ++P   +L  + +F S +G   D+  V E + KL K LDVYE RL + KYLAG+ F+L DL  IP   YL+G   ++ +   R  V+ W  +I+ RP  +KV
Sbjct:   59 EDGDLKLFESRAITQYIAHRYENQGTNLLQTDSKNISQYAIMAIGMQVEDHQFDPVASKLAFEQIFKSIYGLTTDEAVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKK-LFTERPRVNEWVAEITKRPASEKV 211          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GSTF1_WHEAT (Glutathione S-transferase 1 OS=Triticum aestivum GN=GSTA1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.998e-22
Identity = 68/167 (40.72%), Postives = 94/167 (56.29%), Query Frame = -2
Query:  155 QDGDFILYESRAIMRYYAEKYR-SQGTELLGKT--IEERGLVEQWLEVEAHNYNPAIYELTIQLL---FSSKFGRPVDDQSV-KESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHY-LVGPMGRQHMIRARKHVSAWWDDISTRPPWKKVLELCKTPF 631
            QDGD +L+ESRAI +Y   KY  + G +LLG+   IEE  +V+ W EVEA  Y PAI  +  + +   F    G    +Q+V  ES E+L   L +YE RL KS+YLAGD  + ADL+ IPFT Y +  P  +  +      V AWW+ +  RP  ++V +   T F
Sbjct:   59 QDGDLVLFESRAIAKYILRKYGGTAGLDLLGENSGIEELAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSITFADLNHIPFTFYFMTTPYAK--VFDDYPKVKAWWEMLMARPAVQRVCKHMPTEF 223          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GSTF2_WHEAT (Glutathione S-transferase 2 OS=Triticum aestivum GN=GSTA2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.664e-20
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = -2
Query:  155 QDGDFILYESRAIMRYYAEKYR-SQGTELLGKT--IEERGLVEQWLEVEAHNYNPAIYELTIQLL---FSSKFGRPVDDQSV-KESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHY-LVGPMGRQHMIRARKHVSAWWDDISTRPPWKKVLELCKTPF 631
            QDG+ +  +SRAI +Y   KY  + G +LLG+   IEE  +V+ W EVEA  Y PAI  +  + +   F    G    +Q+V  ES E+L   L +YE RL KS+YLAGD  S ADL+ IPFT Y +  P  +  +      V AWW+ +  RP  ++V +   T F
Sbjct:   59 QDGESLHIKSRAIAKYILRKYGGTAGLDLLGENSGIEELAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSISFADLNHIPFTFYFMTTPYAK--VFDEYPKVKAWWEMLMARPAVQRVCKHMPTEF 223          
BLAST of CN188671 vs. ExPASy Swiss-Prot
Match: GSTF5_ARATH (Glutathione S-transferase PM239X14 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.924e-14
Identity = 50/138 (36.23%), Postives = 75/138 (54.35%), Query Frame = -2
Query:  215 LYESRAIMRYYAEKYRSQGTELLGKTIEER--GLVEQWLEVEAHNYNPAIYELTIQLLFSSKFGRPVDDQSVKESDEKLGKTLDVYEERLSKSKYLAGDFFSLADLSPIPFTHYLVGPMGRQ---HMIRARKHVSAWW 613
            +YESRAI RY   KY  +G+ LL    + +  GL EQ   VE  +++P    L  + +F+   G   +++  K+  + L   +D YE  LSK KYLAG+ F+LADL  +P+     G M  Q    ++ ++ HV AWW
Sbjct:   67 IYESRAISRYLVAKY-GKGSSLLPSPSDPKAYGLFEQAASVEYSSFDPPASSLAYERVFAGMRGLKTNEELAKKYVDTLNAKMDGYERILSKQKYLAGNDFTLADLFHLPY-----GAMVAQLEPTVLDSKPHVKAWW 198          
The following BLAST results are available for this feature:
BLAST of CN188671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GSTF1_MAIZE4.469e-2644.59Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE... [more]
GSTF1_ARATH4.469e-2640.79Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]
GST11_ARATH4.469e-2641.45Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF1_TOBAC5.837e-2641.18Glutathione S-transferase PARB OS=Nicotiana tabacu... [more]
GST16_ARATH4.941e-2540.65Glutathione S-transferase 16 OS=Arabidopsis thalia... [more]
GSTF4_ARATH6.453e-2540.26Glutathione S-transferase PM24 OS=Arabidopsis thal... [more]
GSTF1_WHEAT2.998e-2240.72Glutathione S-transferase 1 OS=Triticum aestivum G... [more]
GSTF2_WHEAT3.664e-2039.52Glutathione S-transferase 2 OS=Triticum aestivum G... [more]
GSTF5_ARATH3.924e-1436.23Glutathione S-transferase PM239X14 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006I15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188671 ID=CN188671; Name=CN188671; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTTTTTTTTTTTAAAAGCTCCAACTCCAAACATTTCTTTATTTGA
AACACACATATGCAAGAAACATATCCCACAGCCTTAAACAAACCAAGTAG
TAGAGAAGTAAAACACAAGCCCGAAAATTGAAACACATACAATCAAGCTC
AGCCGAAAGGAGTCTTACAGAGCTCAAGGACTTTCTTCCAGGGGGGGCGG
GTGCTAATATCATCCCACCAGGCACTCACATGCTTCCTGGCTCTAATCAT
ATGCTGTCTCCCCATCGGCCCAACCAAGTAGTGGGTAAATGGAATGGGAC
TCAGATCAGCCAGGCTGAAGAAATCACCAGCCAAATACTTGCTCTTCGAC
AGCCTCTCCTCGTAAACGTCGAGCGTTTTTCCAAGCTTTTCGTCACTCTC
CTTCACCGATTGGTCATCAACGGGACGTCCAAACTTGGAGGAAAATAAAA
GTTGGATGGTCAGCTCGTAAATTGCTGGGTTGTAGTTGTGTGCCTCTACT
TCTAGCCACTGTTCCACCAGGCCTCTTTCTTCAATTGTTTTACCCAGAAG
TTCGGTTCCTTGAGACCTGTACTTTTCAGCGTAGTACCTCATGATAGCTC
GCGACTCGTATAAAATAAAATCTCCATCTTGA
back to top