CN181605

Overview
NameCN181605
Unique NameCN181605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_SHIBS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECOSE (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain SE11) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLI (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12) GN=hcaB PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLC (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECOHS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECODH (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECOBW (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12 / BW2952) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECO8A (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++   +G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALI-SSEGSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECO55 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
[Close]
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCAB_ECO24 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hcaB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = 2 
Query:  146 VELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            VE F E GA+V   ++       L  + G+ +  +  +++   +    VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+ +
Sbjct:   23 VERFIEEGAQVATLELSAAKVASLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMASDL 192
The following BLAST results are available for this feature:
BLAST of CN181605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HCAB_SHIBS2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOSE2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLI2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLC2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOHS2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECODH2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOBW2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO8A2.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO552.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECO242.024e-1734.103-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181605 ID=CN181605; Name=CN181605; organism=Citrus sinensis; type=EST; length=693bp
GGTTCCTAACACCCTCTCTGCTTTTAATTAGTTTCAGGTTTTTGAAGAAA
AGATGAACGGCCCTTCTTCTGCAGCTCCCTTCAAAAGGTTAGAAGGCAAA
GTGGCAATCATCACCGGAGGAGCAAGCGGCATCGGAGCAATGGCGGTTGA
ACTCTTCCATGAAAATGGCGCCAAAGTTGTTATTGCCGATGTCCAGGATA
AGCTTGGCGAAGACCTTGCTGATAAGCTGGGCCAAGATGTTTGCTACATC
CATTGTGATATCTCAAATGAAGATGAAGTCATCAATCTCGTTGATACCGC
CGTTTCTAAATTTGGAAAGCTCGATATCATGTACAACAATGCAGGAATTC
TTGACCGCAGCTTTGGGAGCATTTTGGACACTCCAAAGTCTGATCTAGAA
CGCTTAATTAATGTAAACACTATAGGTGGTTTCTTAGGAGCCAAGCATGC
TGCAAGAGTCATGGTGCCACAGCAAAAAGGTTGCATACTGTTTACAGCTA
GTGCTTGTACAGAAATTGCAGGGCTTGGCTCCCCTGCTTATACAATATCC
AAATATGGGATTTTAGGACTAGTAAAGTGCTTGGCAGCAGAGCTTGGACA
GTATGGAATAAGAGTAAATTGCGTCTCGCCTTATGGTTTGGCGACAGGAA
TGTCGATGAAAGGTGGAGTCGATCCGGCTCCTATAGAATCATC
back to top