CN181605

Overview
NameCN181605
Unique NameCN181605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCD2_BOVIN (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taurus GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 56/165 (33.94%), Postives = 84/165 (50.91%), Query Frame = 2
Query:  167 GAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKS----DLERLINVNTIGGFLGAKHAARVMVPQ------QKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSP 631
            GA  V+ D+ +  GE  A KLG+   +   D+++E +V   +  A  KFG++D+  N AGI   S    L   ++    D +R+INVN IG F   +  A  M         Q+G I+ TAS       +G  AY+ SK GI+G+   +A +L   GIRV  ++P
Sbjct:   34 GATAVLLDLPNSDGETQAKKLGKSCAFAPADVTSEKDVQAALTLAREKFGRVDVAVNCAGIAVASKTYNLKKSQAHTLEDFQRVINVNLIGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPMGIRVMTIAP 198          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.603e-14
Identity = 66/209 (31.58%), Postives = 99/209 (47.37%), Query Frame = 2
Query:   89 LEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQDKLG----EDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---APIES 691
            L+GKV                 F +  AKVVI    +K      ++   K G +   +  D++ E++V N+V TA+ +FG LDIM NNAG L+    S  + P  D +++I  N  G FLG++ A +  V    KG ++  +S    I       Y  SK GI  + + LA E    GIRVN + P  + T ++ +   DP   A +ES
Sbjct:    5 LKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQDPNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMINNAG-LENPVPS-HEMPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKADVES 211          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: SDR1_PICAB (Short-chain type dehydrogenase/reductase OS=Picea abies PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 59/183 (32.24%), Postives = 88/183 (48.09%), Query Frame = 2
Query:  161 ENGAKVVI--------ADVQDKLGEDLADKLGQDVCYIHC--DISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPA 679
            E GAKVVI        A+    +  + +   G  V  I C  D++   +V  L DTA   FG L I+ NNAG+ D  + ++  T   + +R+  VN  G FL ++ AA+ +V    G I+  +S+   +      AYT SK  +  + + LA EL    I  NCV+P  +AT M   G  + A
Sbjct:   43 EKGAKVVIHYSSNQHAAEEVASIINNKSPSSGDGVRAIVCKADVAEPSQVAQLFDTAEHAFGPLHIVVNNAGVTDSKYPTLAQTSDEEWDRIFQVNCKGAFLCSREAAKRVVRGGGGRIINISSSLVAMPIPRYGAYTASKAAVEMMTRILAQELRGTQITANCVAPGPVATDMFFAGKSEAA 225          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 62/198 (31.31%), Postives = 90/198 (45.45%), Query Frame = 2
Query:   80 FKRLEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQDKLGED----LADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPK----SDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLAT 646
            +K L GK                E F +    VV+    D  G D    +  + G     +  D+S E+ +  L+DTA+  FG LD+M NN+G     F  +   P      D +R+I+VN  G FLGAK A   M+    KG +L  +S   +I    +  Y+ SK GI  + + LA      GIRVN ++P  +AT
Sbjct:    2 YKDLTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSG-----FNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIAT 194          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: LIMC_RHOER ((-)-trans-carveol dehydrogenase OS=Rhodococcus erythropolis GN=limC PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.735e-14
Identity = 68/218 (31.19%), Postives = 102/218 (46.79%), Query Frame = 2
Query:   86 RLEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQ-------------DKLGEDLAD--KLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVP-----QQKGCILFTASACTEIAGLGSPA----YTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGG 667
            R+EG+V                   E GA V++ DV              D+L +   D   LG+    IH D+ + + +   VD AVS  G+LDI+  NAGI    F S  D P +   ++I++N      G  H A+V VP     ++ G I+ T+SA    AGL   A    Y+ +K+G++GL++ LA EL  + +RVN + P  + T M    G
Sbjct:    3 RVEGQVALITGAARGQGRSHAIKLAEEGADVILVDVPNDVVDIGYPLGTADELDQTAKDVENLGRKAIVIHADVRDLESLTAEVDRAVSTLGRLDIVSANAGIASVPFLS-HDIPDNTWRQMIDIN----LTGVWHTAKVAVPHILAGERGGSIVLTSSA----AGLKGYAQISHYSAAKHGVVGLMRSLALELAPHRVRVNSLHPTQVNTPMIQNEG 211          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: LVR_LEIAQ (Levodione reductase OS=Leifsonia aquatica GN=lvr PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 52/168 (30.95%), Postives = 91/168 (54.17%), Query Frame = 2
Query:  167 GAKVVIADVQDKLGED-----LADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPA-YTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM 652
            GAK+ + DV  +  E      L      +V     D+S+E +V   V     +FG++D  +NNAGI  +   +   T  ++ ++++++N  G FLG +   ++M  Q  G ++ TAS    I G+G+ + Y  +K+G++GL +  A E G+YGIR+N ++P  + T M
Sbjct:   37 GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTA-AEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASV-GGIRGIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPM 202          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCD2_RAT (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus norvegicus GN=Hsd17b10 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 58/170 (34.12%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  167 GAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGI--LDRSFGSILDTPKS--DLERLINVNTIGGFLGAKHAARVMVPQ------QKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLAT 646
            GA  V+ DV +  GE  A KLG +  +   ++++E EV   +  A  KFG++D+  N AGI    +++    +   +  D +R+INVN IG F   +  A VM         Q+G I+ TAS       +G  AY+ SK GI+G+   +A +L   GIRV  ++P   AT
Sbjct:   34 GATAVLLDVPNSEGETEAKKLGGNCIFAPANVTSEKEVQAALTLAKEKFGRIDVAVNCAGIAVAIKTYHEKKNQVHTLEDFQRVINVNLIGTFNVIRLVAGVMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVVTIAPGLFAT 203          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: FABG2_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplastic OS=Brassica napus GN=bkr2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 47/139 (33.81%), Postives = 76/139 (54.68%), Query Frame = 2
Query:  257 DISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVD 673
            D+S E +V  ++ TAV  +G +D++ NNAGI   +   ++   KS  + +I++N  G FL  + A ++M+ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D
Sbjct:  143 DVSKEADVDAMMKTAVDAWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED 279          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: HCDR_XANP2 (2-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecD PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 53/172 (30.81%), Postives = 83/172 (48.26%), Query Frame = 2
Query:  155 FHENGAKVVIADVQDKLGEDLA----DKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDT-PKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS 655
            F   G +V   D+  +  E+ A          V  +  D+++E +V   +   + +FG +D++ NNAGI   S   +L T P    ++++ VN  G FLG +     M+ Q  G I+  AS  + +A  G  AYT SK  +L L K +A +    GIR N V P  + T M+
Sbjct:   22 FLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMT 193          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: FABG_BACSU (3-oxoacyl-[acyl-carrier-protein] reductase OS=Bacillus subtilis GN=fabG PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 2
Query:  161 ENGAKVVI--ADVQDKLGE--DLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMK 661
            ++GA VV+  +  + K  E  D    +G+    +  D+SN ++V N++   +S F  +DI+ NNAGI   +   I+   + + + +IN+N  G F   K   R M+ Q+ G I+  +S        G   Y  +K G++GL K  A EL    I VN ++P  ++T M+ K
Sbjct:   26 KSGANVVVNYSGNEAKANEVVDEIKSMGRKAIAVKADVSNPEDVQNMIKETLSVFSTIDILVNNAGITRDNL--IMRMKEDEWDDVININLKGVFNCTKAVTRQMMKQRSGRIINVSSIVGVSGNPGQANYVAAKAGVIGLTKSSAKELASRNITVNAIAPGFISTDMTDK 194          
The following BLAST results are available for this feature:
BLAST of CN181605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
HCD2_BOVIN1.603e-1433.943-hydroxyacyl-CoA dehydrogenase type-2 OS=Bos taur... [more]
DHG_BACSU1.603e-1431.58Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
SDR1_PICAB2.094e-1432.24Short-chain type dehydrogenase/reductase OS=Picea ... [more]
DHG2_BACSU2.094e-1431.31Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
LIMC_RHOER2.735e-1431.19(-)-trans-carveol dehydrogenase OS=Rhodococcus ery... [more]
LVR_LEIAQ3.572e-1430.95Levodione reductase OS=Leifsonia aquatica GN=lvr P... [more]
HCD2_RAT3.572e-1434.123-hydroxyacyl-CoA dehydrogenase type-2 OS=Rattus n... [more]
FABG2_BRANA3.572e-1433.813-oxoacyl-[acyl-carrier-protein] reductase 2, chlo... [more]
HCDR_XANP24.665e-1430.812-(R)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
FABG_BACSU4.665e-1430.413-oxoacyl-[acyl-carrier-protein] reductase OS=Baci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181605 ID=CN181605; Name=CN181605; organism=Citrus sinensis; type=EST; length=693bp
GGTTCCTAACACCCTCTCTGCTTTTAATTAGTTTCAGGTTTTTGAAGAAA
AGATGAACGGCCCTTCTTCTGCAGCTCCCTTCAAAAGGTTAGAAGGCAAA
GTGGCAATCATCACCGGAGGAGCAAGCGGCATCGGAGCAATGGCGGTTGA
ACTCTTCCATGAAAATGGCGCCAAAGTTGTTATTGCCGATGTCCAGGATA
AGCTTGGCGAAGACCTTGCTGATAAGCTGGGCCAAGATGTTTGCTACATC
CATTGTGATATCTCAAATGAAGATGAAGTCATCAATCTCGTTGATACCGC
CGTTTCTAAATTTGGAAAGCTCGATATCATGTACAACAATGCAGGAATTC
TTGACCGCAGCTTTGGGAGCATTTTGGACACTCCAAAGTCTGATCTAGAA
CGCTTAATTAATGTAAACACTATAGGTGGTTTCTTAGGAGCCAAGCATGC
TGCAAGAGTCATGGTGCCACAGCAAAAAGGTTGCATACTGTTTACAGCTA
GTGCTTGTACAGAAATTGCAGGGCTTGGCTCCCCTGCTTATACAATATCC
AAATATGGGATTTTAGGACTAGTAAAGTGCTTGGCAGCAGAGCTTGGACA
GTATGGAATAAGAGTAAATTGCGTCTCGCCTTATGGTTTGGCGACAGGAA
TGTCGATGAAAGGTGGAGTCGATCCGGCTCCTATAGAATCATC
back to top