CN181605

Overview
NameCN181605
Unique NameCN181605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 55/206 (26.70%), Postives = 97/206 (47.09%), Query Frame = 2
Query:   86 RLEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQDKLGEDLADKL----GQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPAPIES 691
            +LEGKV               +   ++GA VV+     K G D   +     G     +  D+S   +   LV+ AV +FG+LD++ NN+G+ +  F +I +  +    R+ +VN +G  L  + A++ +   + G I+  +S  T++    S  Y+ +K  +  +   LA EL    IRVN VSP  + T  +   G+  + +E+
Sbjct:    3 KLEGKVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKAGADAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRLDVLVNNSGVYE--FAAIEEVTEEHYRRIFDVNVLGVLLATQAASKHL--GEGGSIINISSVVTDVLMPTSAVYSGTKGALNAISGVLANELAPRKIRVNVVSPGYVVTEGTHTAGIAGSEMEA 204          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: FABG_RICTY (3-oxoacyl-[acyl-carrier-protein] reductase OS=Rickettsia typhi GN=fabG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 49/170 (28.82%), Postives = 88/170 (51.76%), Query Frame = 2
Query:  152 LFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMK 661
            L H+ G+KV+I+   +K  + L + L  +     C+++N++E  NL    +SK   LDI+  NAGI   +    +     D +++I++N    F+  + A + M+ ++ G I+  +S        G   Y  SK G++G+ K L+ E+   GI VN V+P  + + M+ K
Sbjct:   25 LLHKLGSKVIISGSNEKKLKLLGNTLKDNYIIEVCNLANKEECNNL----ISKISNLDILVCNAGITSDTLA--IRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDK 188          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 58/182 (31.87%), Postives = 91/182 (50.00%), Query Frame = 2
Query:  161 ENGAKVVIAD-VQDKLGEDLADKLGQ--DVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTAS--ACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPAPIES 691
            ++GA VV++   Q  +   +A   G+   V    C +   ++   LV TAV   G +DI+ +NA +    FGS++D P+   +++++VN     L  K     M  +  G I+  +S  A +    LG   Y +SK  +LGL K LA EL +  +RVNC++P  + T  S     DPA  ES
Sbjct:   36 QDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGVDILISNAAV-SPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGP--YNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFSRVLWEDPARQES 214          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 51/161 (31.68%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  221 DKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---APIES 691
            ++ G     +  D++ E++V+NLV+TAV +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP   A +ES
Sbjct:   53 EEAGGQAIIVRGDVTKEEDVVNLVETAVKEFGSLDVMINNAGVENPVPSHELSL--ENWNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPINAEKFADPEQRADVES 211          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: BPHB_PSEPU (Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=Pseudomonas putida GN=bphB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 55/189 (29.10%), Postives = 91/189 (48.15%), Query Frame = 2
Query:   86 RLEGKVXXXXXXXXXXXXXXVELFHENGAKVVIADVQDKLGEDLADKLGQDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGL 640
            +L G+V              V+ F    AKV + D   +    L    G +V  +  D+ + ++        V+KFGK+D +  NAGI D S  +++D P+  L+     + ++N + G++ A  A    +   +G ++FT S        G P YT +K+ ++GLV+ LA EL  Y +RVN V P G+
Sbjct:    2 KLTGEVVLITGGASGLGRALVDRFVAERAKVAVLDKSAERLAQLETDHGDNVLGVTGDVRSLEDQKQAASRCVAKFGKIDTLIPNAGIWDYST-ALIDLPEESLDAAFDEVFHIN-VKGYIHAVKACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAVVGLVRELAFELAPY-VRVNGVGPGGI 187          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: BAIA2_EUBSP (Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (strain VPI 12708) GN=baiA2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 53/174 (30.46%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  149 ELFHENGAKV-VIADVQDKLGEDLADKLG----QDVCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS 655
            ++F +NGAKV +  + Q+++   LA        ++V     D+++ D V+  V     K+G+LD+M NNAGI   +  S +   + + + ++++N  G F GA  A + M   +KG I+ TAS       L    Y  SK  ++GL   L  E+ +  IRV  V+P  + T M+
Sbjct:   24 KIFIDNGAKVSIFGETQEEVDTALAQLKELYPEEEVLGFAPDLTSRDAVMAAVGQVAQKYGRLDVMINNAGITSNNVFSRVS--EEEFKHIMDINVTGVFNGAWCAYQCMKDAKKGVIINTASVTGIFGSLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDMT 195          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: Y2567_STAAR (Uncharacterized oxidoreductase SAR2567 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2567 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = 2
Query:  152 LFHENGAKVVIADVQDKLGEDLADKLGQD-VCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSP 631
            L HE GAKVV+A       +++A++L QD V  +  D++ ++EV  L+  A   FG LDI+ N+AG +  S   I D    + + +I+VN  G    AK A   M+ Q  G ++  AS         S  Y+ +K  +  + + L  EL + G++V  +SP
Sbjct:   25 LLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPTDVTKKEEVDELIKMAQQTFGGLDIVINSAGQMLSS--KITDYQVDEWDSMIDVNIKGTLYTAKAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISP 183          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: Y2478_STAAM (Uncharacterized oxidoreductase SAV2478 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2478 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 52/161 (32.30%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  152 LFHENGAKVVIADVQDKLGEDLADKLGQD-VCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSP 631
            L HE GAKVV+A       +++A++L QD V  +  D++N++EV  L+  A   FG LDI+ N+AG +  S   I D    + + +I+VN  G    A+ A   M+ Q  G ++  AS         S  Y+ +K  +  + + L  EL + G++V  +SP
Sbjct:   25 LLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPTDVTNKEEVDELMKIAQQTFGGLDIVINSAGQMLSS--KITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISP 183          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: Y2403_STAAW (Uncharacterized oxidoreductase MW2403 OS=Staphylococcus aureus (strain MW2) GN=MW2403 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  152 LFHENGAKVVIADVQDKLGEDLADKLGQD-VCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSP 631
            L HE GAKVV+A    +  +++A++L QD V  +  D++N++EV  L+  A   FG LDI+ N+AG +  S   I D    + + +I+VN  G     + A   M+ Q  G ++  AS         S  Y+ +K  +  + + L  EL + G++V  +SP
Sbjct:   25 LLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPTDVTNKEEVDELIKIAQQTFGGLDIVINSAGQMLSS--KITDYQVDEWDSMIDVNIKGTLYTVQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISP 183          
BLAST of CN181605 vs. ExPASy Swiss-Prot
Match: Y2370_STAAS (Uncharacterized oxidoreductase SAS2370 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2370 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 51/161 (31.68%), Postives = 84/161 (52.17%), Query Frame = 2
Query:  152 LFHENGAKVVIADVQDKLGEDLADKLGQD-VCYIHCDISNEDEVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVMVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSP 631
            L HE GAKVV+A    +  +++A++L QD V  +  D++N++EV  L+  A   FG LDI+ N+AG +  S   I D    + + +I+VN  G     + A   M+ Q  G ++  AS         S  Y+ +K  +  + + L  EL + G++V  +SP
Sbjct:   25 LLHEEGAKVVLAGRNKEKLQNVANQLSQDSVKVVPTDVTNKEEVDELIKIAQQTFGGLDIVINSAGQMLSS--KITDYQVDEWDSMIDVNIKGTLYTVQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISP 183          
The following BLAST results are available for this feature:
BLAST of CN181605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
Y182_METEA5.158e-1326.70Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]
FABG_RICTY5.158e-1328.823-oxoacyl-[acyl-carrier-protein] reductase OS=Rick... [more]
DHRS4_BOVIN5.158e-1331.87Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHG2_BACME5.158e-1331.68Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
BPHB_PSEPU5.158e-1329.10Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase OS=... [more]
BAIA2_EUBSP5.158e-1330.46Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (st... [more]
Y2567_STAAR6.737e-1332.30Uncharacterized oxidoreductase SAR2567 OS=Staphylo... [more]
Y2478_STAAM6.737e-1332.30Uncharacterized oxidoreductase SAV2478 OS=Staphylo... [more]
Y2403_STAAW6.737e-1331.68Uncharacterized oxidoreductase MW2403 OS=Staphyloc... [more]
Y2370_STAAS6.737e-1331.68Uncharacterized oxidoreductase SAS2370 OS=Staphylo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001D06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181605 ID=CN181605; Name=CN181605; organism=Citrus sinensis; type=EST; length=693bp
GGTTCCTAACACCCTCTCTGCTTTTAATTAGTTTCAGGTTTTTGAAGAAA
AGATGAACGGCCCTTCTTCTGCAGCTCCCTTCAAAAGGTTAGAAGGCAAA
GTGGCAATCATCACCGGAGGAGCAAGCGGCATCGGAGCAATGGCGGTTGA
ACTCTTCCATGAAAATGGCGCCAAAGTTGTTATTGCCGATGTCCAGGATA
AGCTTGGCGAAGACCTTGCTGATAAGCTGGGCCAAGATGTTTGCTACATC
CATTGTGATATCTCAAATGAAGATGAAGTCATCAATCTCGTTGATACCGC
CGTTTCTAAATTTGGAAAGCTCGATATCATGTACAACAATGCAGGAATTC
TTGACCGCAGCTTTGGGAGCATTTTGGACACTCCAAAGTCTGATCTAGAA
CGCTTAATTAATGTAAACACTATAGGTGGTTTCTTAGGAGCCAAGCATGC
TGCAAGAGTCATGGTGCCACAGCAAAAAGGTTGCATACTGTTTACAGCTA
GTGCTTGTACAGAAATTGCAGGGCTTGGCTCCCCTGCTTATACAATATCC
AAATATGGGATTTTAGGACTAGTAAAGTGCTTGGCAGCAGAGCTTGGACA
GTATGGAATAAGAGTAAATTGCGTCTCGCCTTATGGTTTGGCGACAGGAA
TGTCGATGAAAGGTGGAGTCGATCCGGCTCCTATAGAATCATC
back to top