CN181589

Overview
NameCN181589
Unique NameCN181589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_PONAB (Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = -3 
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301
[Close]
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_MACFA (Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = -3 
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301
[Close]
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_HUMAN (Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = -3 
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I  GDFM RFCSNL +             K+ E D+   RSPIS+AAA IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301
[Close]
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_CAEEL (Transcription initiation factor IIB OS=Caenorhabditis elegans GN=ttb-1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = -3 
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I + DFM RFC NL + N            + + D+   R+PISIAAA IY+ +Q S +K+  K+I    G AE T+R +YK LYP   ++ P
Sbjct:  199 ITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFP 291
[Close]
BLAST of CN181589 vs. ExPASy Swiss-Prot
Match: TF2B_BOVIN (Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 39/93 (41.94%), Postives = 52/93 (55.91%), Query Frame = -3 
Query:  365 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXKSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 637
            I  GDFM RFCSNL +             K+ E D+   RSPIS+A A IY+ +Q S +K+  K+I    GVA+ TIR SY+ +YP    + P
Sbjct:  209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAEAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301
The following BLAST results are available for this feature:
BLAST of CN181589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TF2B_PONAB1.631e-1143.01Transcription initiation factor IIB OS=Pongo abeli... [more]
TF2B_MACFA1.631e-1143.01Transcription initiation factor IIB OS=Macaca fasc... [more]
TF2B_HUMAN1.631e-1143.01Transcription initiation factor IIB OS=Homo sapien... [more]
TF2B_CAEEL4.745e-1139.78Transcription initiation factor IIB OS=Caenorhabdi... [more]
TF2B_BOVIN6.198e-1141.94Transcription initiation factor IIB OS=Bos taurus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001C20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181589 ID=CN181589; Name=CN181589; organism=Citrus sinensis; type=EST; length=687bp
ATTATTTTAAACTTTATTAGGTAAAACAATGTAAATAAATTAAGCATAAA
TTGAAAAATAAACTTGTATTAGCTCCTCTCTGTCTCTCTCCCCCTTCTCT
CTGTCTCTCTCTCTTCACTTTTTTTGACTTTTTGTCAATATTTGTAAATT
AAAGGTTGCAATGCAGTCAACTGCACAAAGACAAAACAGTCAAGAAAATA
AGTACGAAAATCCTCGTAAATAGGATGCTGACAGATTCTGAATACATCAA
CGTGAGGGCAGTTCAAACCACTCAAGATGCTTGTTTCACGGTGTTGTTAT
TCATGCGCTCTACATTTTACGGGCTGCAAAGGTTTTTAAGATCCTCTTCC
TTGGCATACCAGTTTGGTATTATCTTTGAGACATGAGGATAAAGATCCTT
GTACGAATTTCTGATTGTCCCCTCAGCAACTCCAGTAGCAACAGAAATAT
CTTTGAGCGGCTTCTTGTCATCTGAAAGCTGAGTTATAATATAAATAACT
GCAGCTGCAATTGATATTGGGCTCCTCCTTATATCAAACTCCTCGGACTT
CTGAACAGCTTCTTGGGCAGCTTTAACAGCTTGATTATTCATACCCAAAT
TGGAACAGAAGCGCCTCATAAAGTCCCCAGCATGTATAGTTCCCATCTCC
ACTGACTGACCAGTCTCCAAACCCAGCTGTTTCACAA
back to top