CN181555

Overview
NameCN181555
Unique NameCN181555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_KLULA (RuvB-like helicase 2 OS=Kluyveromyces lactis GN=RVB2 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.009e-49
Identity = 105/186 (56.45%), Postives = 130/186 (69.89%), Query Frame = 2
Query:   80 LTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            L  +  I AHSHI GLGLD +L+ +  S+GMVGQL AR+AAGVIL+M++ G IAGRAVL+AG P TGKTA+AMG+++SLG + PF  I+ SEIFSLE+SKTEAL QAFRK+IG++IK             QIDR  T               +MET+Y+LG KMIE L KEKV +GDVI+IDK SG
Sbjct:   12 LKSLSLIAAHSHISGLGLDENLQPKPSSQGMVGQLQARRAAGVILKMVQNGSIAGRAVLVAGPPSTGKTALAMGLSQSLGKDVPFTAIAGSEIFSLELSKTEALTQAFRKSIGIKIKEETELIEGEVVEIQIDRSITG--GHKQGKLTIKTTDMETIYELGNKMIEGLTKEKVLAGDVISIDKASG 195          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_YARLI (RuvB-like helicase 2 OS=Yarrowia lipolytica GN=RVB2 PE=3 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 2.485e-48
Identity = 103/198 (52.02%), Postives = 140/198 (70.71%), Query Frame = 2
Query:   47 MAELKLSESRDLTRIERIGAHSHIRGLGLD-SSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            M+   +++++D+  +  + AHSHI GLGL+ +SL  ++ ++GMVGQ+ AR+AA V+LQMIK+GKIAGR+VL+AG P TGKTAIAMG+++SLG + PF  ++ SEI+SLE+SKTEAL QAFRK+IGVRIK             QIDR  +               +MET+YDLG KMI++L  EKV +GDVI+IDK SG
Sbjct:    1 MSIATVAQAKDVRGLNLVAAHSHITGLGLEPNSLTPKENAQGMVGQVKARRAAAVVLQMIKDGKIAGRSVLLAGPPSTGKTAIAMGISQSLGSDVPFTSLAGSEIYSLELSKTEALNQAFRKSIGVRIKETTDIIEGEVVEIQIDRSLSG--GHKQGKLTIKTTDMETIYDLGHKMIDSLSNEKVTAGDVISIDKASG 196          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB2_ASHGO (RuvB-like helicase 2 OS=Ashbya gossypii GN=RVB2 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.536e-48
Identity = 103/196 (52.55%), Postives = 134/196 (68.37%), Query Frame = 2
Query:   56 LKLSESRDLT--RIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRIKXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            ++  E+ D++   +  I  HSHI GLGLD +L+ +  S+GMVGQL AR+AAGVIL+M++ G IAGRAVL+AG P TGKTA+AMG+++SLG + PF  ++ SEIFSLE+SKTEAL QAFRK+IGV+IK             QIDR  T               +MET+Y+LG KMI+ L KEKV +GDVI+IDK  G
Sbjct:    3 IQTQEAHDMSLKSLSLIATHSHIVGLGLDENLQPKPSSQGMVGQLQARRAAGVILKMVQNGTIAGRAVLVAGPPSTGKTALAMGLSQSLGADVPFTAMAGSEIFSLELSKTEALTQAFRKSIGVKIKEDTELIEGEVVEIQIDRSITG--GHKQGKLTIKTTDMETIYELGNKMIDGLTKEKVLAGDVISIDKACG 196          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_RAT (RuvB-like 1 OS=Rattus norvegicus GN=Ruvbl1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 81/198 (40.91%), Postives = 118/198 (59.60%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +K+ E +  T+ +RI +HSH++GLGLD S  A+  + G+VGQ  AR+A GVI+++IK  K+AGRAVL+AG PGTGKTA+A+ +A+ LG + PF  +  SE++S E+ KTE LM+ FR+AIG+RI   K             + + P                    T    L   + E+L KE+V++GDVI I+  SG
Sbjct:    1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSG 198          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_MOUSE (RuvB-like 1 OS=Mus musculus GN=Ruvbl1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 81/198 (40.91%), Postives = 118/198 (59.60%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +K+ E +  T+ +RI +HSH++GLGLD S  A+  + G+VGQ  AR+A GVI+++IK  K+AGRAVL+AG PGTGKTA+A+ +A+ LG + PF  +  SE++S E+ KTE LM+ FR+AIG+RI   K             + + P                    T    L   + E+L KE+V++GDVI I+  SG
Sbjct:    1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSG 198          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_HUMAN (RuvB-like 1 OS=Homo sapiens GN=RUVBL1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.324e-33
Identity = 81/198 (40.91%), Postives = 118/198 (59.60%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +K+ E +  T+ +RI +HSH++GLGLD S  A+  + G+VGQ  AR+A GVI+++IK  K+AGRAVL+AG PGTGKTA+A+ +A+ LG + PF  +  SE++S E+ KTE LM+ FR+AIG+RI   K             + + P                    T    L   + E+L KE+V++GDVI I+  SG
Sbjct:    1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSG 198          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_DROPS (RuvB-like helicase 1 OS=Drosophila pseudoobscura pseudoobscura GN=pont PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.121e-32
Identity = 81/198 (40.91%), Postives = 115/198 (58.08%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +K+ E +   R +RI AHSH++GLGLD +  A   + G+VGQ  AR+AAG+++ +IK  K+AGRA+L+AG PGTGKTAIA+ +A+ LG + PF  +  SE+FS E+ KTE LM+ FR++IG+RI   K             + + P                    T    L   + +AL KEKV+ GDVI I+  SG
Sbjct:    1 MKIEEVKSTVRTQRIAAHSHVKGLGLDEAGSALQSAAGLVGQKAAREAAGIVVDLIKSKKMAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSIGLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSG 198          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_XENLA (RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.911e-32
Identity = 80/198 (40.40%), Postives = 116/198 (58.59%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +K+ E +  T+ +RI  HSH++GLGLD +  A+  + G+VGQ  AR+A GVI+++IK  K+AGRAVL+AG PGTGKTA+A+ +A+ LG + PF  +  SE++S E+ KTE LM+ FR+AIG+RI   K             + + P                    T    L   + E+L KE+V+ GDVI I+  SG
Sbjct:    1 MKIEEVKSTTKTQRIATHSHVKGLGLDENGIAKQAAAGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGNKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIRETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIYESLQKERVEVGDVIYIEANSG 198          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_DANRE (RuvB-like 1 OS=Danio rerio GN=ruvbl1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.911e-32
Identity = 78/198 (39.39%), Postives = 116/198 (58.59%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +K+ E +  T+ +RI +HSH++GLGLD +  A+  + G+VGQ  AR+A G+I ++I+  K+AGRA+L+AG PGTGKTA+A+ MA+ LG + PF  +  SE++S E+ KTE LM+ FR+AIG+RI   K             + + P                    T    L   + E+L KE+V+ GDVI I+  SG
Sbjct:    1 MKIEEVKSTTKTQRIASHSHVKGLGLDEAGNAKQSASGLVGQESAREACGIITELIRSKKMAGRAILLAGPPGTGKTALALAMAQELGNKVPFCPMVGSEVYSSEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIYESLQKERVEVGDVIYIEANSG 198          
BLAST of CN181555 vs. ExPASy Swiss-Prot
Match: RUVB1_DROME (RuvB-like helicase 1 OS=Drosophila melanogaster GN=pont PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.562e-32
Identity = 81/198 (40.91%), Postives = 114/198 (57.58%), Query Frame = 2
Query:   56 LKLSESRDLTRIERIGAHSHIRGLGLDSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAKSLGLETPFAMISASEIFSLEMSKTEALMQAFRKAIGVRI---KXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMET-VYDLGGKMIEALGKEKVQSGDVIAIDKVSG 637
            +K+ E +   R +RI AHSH++GLGLD    A   + G+VGQ  AR+AAG+++ +IK  K+AGRA+L+AG PGTGKTAIA+ +A+ LG + PF  +  SE+FS E+ KTE LM+ FR++IG+RI   K             + + P                    T    L   + +AL KEKV+ GDVI I+  SG
Sbjct:    1 MKIEEVKSTVRTQRIAAHSHVKGLGLDEVGAAVHSAAGLVGQKAAREAAGIVVDLIKSKKMAGRALLLAGPPGTGKTAIALAIAQELGNKVPFCPMVGSEVFSNEIKKTEVLMENFRRSIGLRIRETKEVYEGEVTELTPVETENPMGGYGKTISNVVIGLKTAKGTKQLKLDPSIFDALQKEKVEVGDVIYIEANSG 198          
The following BLAST results are available for this feature:
BLAST of CN181555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB2_KLULA1.009e-4956.45RuvB-like helicase 2 OS=Kluyveromyces lactis GN=RV... [more]
RUVB2_YARLI2.485e-4852.02RuvB-like helicase 2 OS=Yarrowia lipolytica GN=RVB... [more]
RUVB2_ASHGO5.536e-4852.55RuvB-like helicase 2 OS=Ashbya gossypii GN=RVB2 PE... [more]
RUVB1_RAT1.324e-3340.91RuvB-like 1 OS=Rattus norvegicus GN=Ruvbl1 PE=1 SV... [more]
RUVB1_MOUSE1.324e-3340.91RuvB-like 1 OS=Mus musculus GN=Ruvbl1 PE=1 SV=1[more]
RUVB1_HUMAN1.324e-3340.91RuvB-like 1 OS=Homo sapiens GN=RUVBL1 PE=1 SV=1[more]
RUVB1_DROPS1.121e-3240.91RuvB-like helicase 1 OS=Drosophila pseudoobscura p... [more]
RUVB1_XENLA1.911e-3240.40RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1[more]
RUVB1_DANRE1.911e-3239.39RuvB-like 1 OS=Danio rerio GN=ruvbl1 PE=2 SV=1[more]
RUVB1_DROME5.562e-3240.91RuvB-like helicase 1 OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181555 ID=CN181555; Name=CN181555; organism=Citrus sinensis; type=EST; length=637bp
GAGGAAACCCTAAACCACACGCTATCAAACCACAACCATCACCAGAATGG
CGGAGCTAAAGCTATCGGAAAGCCGAGACCTAACACGAATCGAGCGTATA
GGTGCACACTCCCATATTCGTGGTCTTGGTCTAGACTCATCCCTAGAAGC
GCGCGATGTCTCTGAAGGCATGGTGGGTCAGCTCCCCGCCCGTAAGGCCG
CCGGCGTCATACTCCAAATGATCAAAGAAGGAAAAATCGCGGGTCGGGCC
GTCCTCATTGCGGGGCAACCCGGCACTGGTAAAACCGCCATAGCAATGGG
CATGGCGAAGTCTCTCGGCCTTGAAACTCCCTTTGCCATGATCTCCGCCT
CCGAAATTTTCTCCCTCGAAATGTCGAAAACCGAAGCGCTAATGCAAGCC
TTTAGAAAGGCTATTGGCGTGAGAATCAAAGAAGAAGCCGAAGTTATTGA
AGGAGAAGTTGTTGAGGTGCAGATTGACCGCCCTGCAACATCTGGGGCGG
CAGCGAAGACAGGGAAGCTGACACTGAAAACTACGGAGATGGAGACCGTT
TATGACTTGGGAGGGAAGATGATTGAGGCATTGGGTAAGGAGAAGGTGCA
GAGTGGAGATGTGATTGCTATTGATAAGGTTTCGGGG
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