CN181535

Overview
NameCN181535
Unique NameCN181535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 3
Query:  123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            ID+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  104 IDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 3
Query:  123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            ID+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  104 IDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_HUMAN (40S ribosomal protein S8 OS=Homo sapiens GN=RPS8 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 3
Query:  123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            ID+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  104 IDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_BOVIN (40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 51/112 (45.54%), Postives = 71/112 (63.39%), Query Frame = 3
Query:  123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            ID+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  104 IDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.167e-22
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            ++IDA PF+QWY  HY + +GR            E EE         K+S     K + RQ+   ++P +EEQF +GR+LACI+SRPGQCGR DGYILEGKELEFYM++++
Sbjct:  102 VTIDATPFRQWYEGHYVLPLGRKRGAKLT-----EAEE----EVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIK 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_SPOFR (40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 53/109 (48.62%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            +DA PF+QWY  HY + +GR            E E+    A    K+S    +K   RQ+   ++  +EEQF +GRLLAC+ASRPGQCGRADGYILEGKELEFY++K++
Sbjct:  104 VDATPFRQWYESHYLLPLGRKKGAKLT-----EAED----AIINKKRSQKTAKKYLARQRLSKVESALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRKIK 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_DANRE (40S ribosomal protein S8 OS=Danio rerio GN=rps8 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 3
Query:  123 IDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            +D+ P++QWY  HY + +GR                   P  EE    K+S  V +K   R+K   + P +EEQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:  104 VDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRT-LDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452
            + IDA PF+Q+Y  HYG+DIG+              + GD    EE+K S     K EKR + R  LD  I+E F SGRL A IASRPGQ GRADGY+LEGKELEFY K +Q+
Sbjct:  102 IQIDATPFRQYYHNHYGIDIGKK-------------KAGD----EESKFSKRHAGKQEKRCQTRLPLDEGIKELFQSGRLYASIASRPGQSGRADGYLLEGKELEFYAKAMQK 197          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_CAEEL (40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.569e-20
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 449
            +S+DAAPF+QWY  HY + + R              EE +A   +  K+S H ++K  +RQK   +D  + EQF +GRLLA I+S PGQ G+A+GYILEGKEL+FY++K++
Sbjct:  102 ISVDAAPFRQWYEAHYALPLARKKNAKL-------SEEDNAILNK--KRSHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIR 203          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8B_SCHPO (40S ribosomal protein S8-B OS=Schizosaccharomyces pombe GN=rps8b PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 49/110 (44.55%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKL 446
            + IDAAPF+ WY  HYG+ +G             +G++  A  T    KS HV RK   R  D  +D  +E QF +GRL A ++SRPGQ GR DGYILEG+EL FY++++
Sbjct:  102 VQIDAAPFRVWYETHYGILMGS------------KGKKATATPTP---KSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196          
The following BLAST results are available for this feature:
BLAST of CN181535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MOUSE4.115e-2245.5440S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]
RS8_MACFA4.115e-2245.5440S ribosomal protein S8 OS=Macaca fascicularis GN... [more]
RS8_HUMAN4.115e-2245.5440S ribosomal protein S8 OS=Homo sapiens GN=RPS8 P... [more]
RS8_BOVIN4.115e-2245.5440S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=... [more]
RS8_APIME9.167e-2247.7540S ribosomal protein S8 OS=Apis mellifera GN=RpS8... [more]
RS8_SPOFR1.197e-2148.6240S ribosomal protein S8 OS=Spodoptera frugiperda ... [more]
RS8_DANRE1.197e-2145.5440S ribosomal protein S8 OS=Danio rerio GN=rps8 PE... [more]
RS8_GRIJA3.851e-2051.3340S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8_CAEEL6.569e-2045.0540S ribosomal protein S8 OS=Caenorhabditis elegans... [more]
RS8B_SCHPO2.113e-1844.5540S ribosomal protein S8-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181535 ID=CN181535; Name=CN181535; organism=Citrus sinensis; type=EST; length=649bp
GGACGCTGGTGCTCAATGACCACCCAGTGAAGTCTATTAACCATGCCATT
TGTTCCTGACCCTCTGGAAGGTTTAGGATAGCATTCTCTATGAGATAGAC
TAGGTGTCTCATCTGATTGTCTATTGATGCAGCACCATTCAAGCAGTGGT
ATCTCCAGCATTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAGCT
GCTGCCACAACCAAGAAAGAAGGAGAGGAAGGAGACGCTCCTGCCACTGA
GGAGGCAAAGAAGAGCAGCCATGTCTTGAGAAAGCTTGAGAAGCGTCAAA
AAGATCGCACACTTGACCCACATATTGAGGAGCAGTTTGGTAGTGGTCGT
TTGTTAGCTTGTATCGCATCACGGCCCGGCCAGTGTGGACGTGCTGATGG
ATACATCTTGGAGGGTAAAGAGCTGGAATTCTACATGAAGAAGTTACAGA
GGAAGAAGGGCAAGGGTGCTGGTGCTGCTTAAATTTTTGTTTATTGAAAC
TCCGTACTGGAATTTCTAGTTTTGTCTTGTGTTCTTGTTTTTAGTCTCAA
GTTAAAACTTGGAGAGTTGAGATGATATCAGCAGTTGAACTTGTATTTCG
AACTTGTGTTACTGTTATATTTTGTTTTGAATATTACCAGTGCCTGCCT
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