CN181535

Overview
NameCN181535
Unique NameCN181535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8A_SCHPO (40S ribosomal protein S8-A OS=Schizosaccharomyces pombe GN=rps8a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.605e-18
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKL 446
            + IDAAPF+ WY  HYG+ +G                +G    +    KS HV RK   R  D  +D  +E QF +GRL A ++SRPGQ GR DGYILEG+EL FY++++
Sbjct:  102 VQIDAAPFRVWYETHYGILMG---------------SKGKKATSTPNPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_YEAST (40S ribosomal protein S8 OS=Saccharomyces cerevisiae GN=RPS8A PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKL 446
            + IDA PF+QW+  HYG  +G+               + +    E   KS +  RK   R     ++  +E QF +GRL ACI+SRPGQ GR DGYILEG+EL FY+++L
Sbjct:  102 VQIDATPFRQWFEAHYGQTLGK---------------KKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRL 196          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_LEIMA (40S ribosomal protein S8 OS=Leishmania major GN=RPS8 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEA----KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452
            +++DAAPFK+WY +HYG+D+              +     A A  +     K S  + R+  +R+++  ++  I +Q   GR+LA I SRPGQ GRADG +LEG EL+FY+K+L++
Sbjct:  102 VAVDAAPFKRWYAKHYGIDLDADKKSTKAAVAAEKKGRKSAHAAADKYDVNKASPKLQREWTRRRRNHRVEKAIADQLREGRVLARITSRPGQSGRADGILLEGAELQFYLKRLEK 217          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 41/112 (36.61%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452
            +++D  PFK W+  HYG+++G+                    ++E+ + S  V   + +   D         QF SGRLLACI+SRPGQCGR DGY+LEG+EL FY +++ +
Sbjct:  102 VTVDPTPFKLWFKTHYGLELGK--------------------SSEDPQASEKVAALVPRTLLD---------QFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRMDK 184          
BLAST of CN181535 vs. ExPASy Swiss-Prot
Match: RS8_THEAN (40S ribosomal protein S8 OS=Theileria annulata GN=RPS8 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 3
Query:  117 LSIDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 452
            +++D  PFK W+  HYGV++                        E+ + S  V   + K          + EQF SGRLLACI+SRPGQCGR DGY+LEG+EL FY +++ +
Sbjct:  102 VTVDPTPFKLWFKTHYGVEL------------------------EDPQASEKVAGLVPKT---------LLEQFSSGRLLACISSRPGQCGRCDGYVLEGEELNFYRRRMDK 180          
The following BLAST results are available for this feature:
BLAST of CN181535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8A_SCHPO3.605e-1842.7340S ribosomal protein S8-A OS=Schizosaccharomyces ... [more]
RS8_YEAST1.049e-1740.9140S ribosomal protein S8 OS=Saccharomyces cerevisi... [more]
RS8_LEIMA5.205e-1737.9340S ribosomal protein S8 OS=Leishmania major GN=RP... [more]
RS8_THEPA3.730e-1536.6140S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]
RS8_THEAN2.418e-1437.5040S ribosomal protein S8 OS=Theileria annulata GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001B11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181535 ID=CN181535; Name=CN181535; organism=Citrus sinensis; type=EST; length=649bp
GGACGCTGGTGCTCAATGACCACCCAGTGAAGTCTATTAACCATGCCATT
TGTTCCTGACCCTCTGGAAGGTTTAGGATAGCATTCTCTATGAGATAGAC
TAGGTGTCTCATCTGATTGTCTATTGATGCAGCACCATTCAAGCAGTGGT
ATCTCCAGCATTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAGCT
GCTGCCACAACCAAGAAAGAAGGAGAGGAAGGAGACGCTCCTGCCACTGA
GGAGGCAAAGAAGAGCAGCCATGTCTTGAGAAAGCTTGAGAAGCGTCAAA
AAGATCGCACACTTGACCCACATATTGAGGAGCAGTTTGGTAGTGGTCGT
TTGTTAGCTTGTATCGCATCACGGCCCGGCCAGTGTGGACGTGCTGATGG
ATACATCTTGGAGGGTAAAGAGCTGGAATTCTACATGAAGAAGTTACAGA
GGAAGAAGGGCAAGGGTGCTGGTGCTGCTTAAATTTTTGTTTATTGAAAC
TCCGTACTGGAATTTCTAGTTTTGTCTTGTGTTCTTGTTTTTAGTCTCAA
GTTAAAACTTGGAGAGTTGAGATGATATCAGCAGTTGAACTTGTATTTCG
AACTTGTGTTACTGTTATATTTTGTTTTGAATATTACCAGTGCCTGCCT
back to top