CN181521

Overview
NameCN181521
Unique NameCN181521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = -3
Query:  541 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF 681
            +RNWG NWQSNA L GQSLSF V+  D R  T+WN+ P+NW FG T+
Sbjct:  202 SRNWGANWQSNAYLAGQSLSFIVQLDDGRKVTAWNVAPSNWFFGATY 248          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 30/52 (57.69%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  526 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 681
            +RNWGQNWQSN+ +  QSLSF+V  SD R+  S ++ P+NWQFGQT+ G  F
Sbjct:  202 SRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = -3
Query:  526 RNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTF-VGKNF 678
            RNWGQ WQ++ VL G+SL+FRV   D R +TSW+++P +WQFG T+   KNF
Sbjct:  217 RNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDWQFGVTYQATKNF 268          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = -3
Query:  523 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNFR 681
            +RNWGQNWQSN+ L GQSLSF+V  SD ++  S N+  A W FGQTF G   R
Sbjct:  198 SRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = -3
Query:  532 RNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 678
            +NWGQNW ++ VL GQ LSFRV  +D  +   WN++P NW FGQTF GK
Sbjct:  228 KNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDGK 276          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = -3
Query:  526 ARNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGKNF 681
            + NWG NWQ+ A L GQ LSFRV ASD R+ TS N+ P+ W FGQTF G  F
Sbjct:  197 SHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
BLAST of CN181521 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = -3
Query:  532 RNWGQNWQSNAVLVGQSLSFRVKASDRRSSTSWNIVPANWQFGQTFVGK 678
            +NWGQNW +  VL GQ LSFRV  SD  +   WN++P NW FGQTF G+
Sbjct:  222 KNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDGR 270          
The following BLAST results are available for this feature:
BLAST of CN181521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
EXPA3_ORYSJ1.014e-1161.70Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA8_ARATH1.325e-1157.69Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP32_ORYSJ1.325e-1155.77Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ARATH1.730e-1158.49Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP26_ARATH2.951e-1157.14Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP11_ORYSJ5.034e-1159.62Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH8.587e-1157.14Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001B04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181521 ID=CN181521; Name=CN181521; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTTTAAGAAAAGCAAACCAAATATCTTGCATTAATTC
GATATTTAAGTTACTACATTATATATACCAGCACCACCACCACCTCCATC
ATCTTCATAATACACTTAATAATATTACAACACTAAACGAAATATAAAAG
CTAATTAATTAAAGCTGCGGGCTACATCATTCCACTGCAGCCGCTTCAGC
CCTCATCTAGCTTTCCCTAAACACCAATCATTCAACAACAAAGCCATTAA
TTAACCCACCAATCAAAAAGAAACCCAAAAAAAATGAAAATGATAATAAA
GTTTCACTCTTTTCCAACCAATTACCCTCCCGATTTTACTCTTTAACTTT
CACGTTCTCCAACAGGACCATCACCCACAAGTCAAAGCAAAAAAGAAAAA
TATACATATATATATATTTAAAGTTATAATAAGAAAGGGTAAAATTGGAA
AATGGCCATGGCGGGAAAGATTGATTAATTATTTTTTTTCTATTTTTTTA
AAACTCCTCCGTTAACTTAGACTCTGAAATTCTTTCCAACGAATGTTTGA
CCAAACTGCCAGTTAGCTGGCACAATGTTCCACGAGGTGGAGCTGCGTCG
GTCACTGGCTTTCACCCTAAACGAAAGTGACTGCCCTACCAGCACTGCGT
TAGACTGCCAGTTTTGGCCCCAGTTACGGGCTCATGCTCATCCAGCCAGT
TCTTTGA
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