CK940137

Overview
NameCK940137
Unique NameCK940137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 62/138 (44.93%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  226 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREI 639
            KRL  +   L      GIS  P++++I  W   I G  DT ++G  ++L+L F+ DYP K P V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+++S N+ EY + V ++
Sbjct:   39 KRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWS-NQEEYRKMVEKL 175          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  208 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 651
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  208 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 651
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  208 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 651
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 62/162 (38.27%), Postives = 95/162 (58.64%), Query Frame = 1
Query:  208 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 651
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++M+ +++ ++ +  ++IV++S
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQKS 162          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.971e-28
Identity = 60/142 (42.25%), Postives = 88/142 (61.97%), Query Frame = 1
Query:  226 KRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 648
            KRL  +  +L       IS  P  DN +  W   I GP DTP+ G  FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ AA ++  +  EY ++V    E+
Sbjct:   11 KRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACYEE 152          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.480e-28
Identity = 57/137 (41.61%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  226 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 636
            KR++++ +RL  +P  GIS  P  ++   +   I GP D+P++GG F L L  T+DYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N++E   R RE
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARARE 142          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.446e-27
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  208 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNS-----IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 633
            MS+  + RL  + K+ ++D P G    P  +S     +M W   I G   T W+GG +KLT+ F E+YP +PP  RF   +FHPN+Y  G++CL IL  +  W P   +  IL  IQ LL DPN  SPA +EA  MF ++K EY +RVR
Sbjct:    1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.446e-27
Identity = 59/156 (37.82%), Postives = 94/156 (60.26%), Query Frame = 1
Query:  208 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 633
            MS  A+KRL+++ ++L +D P GI   P+ +N+I +W+ +I GP DTP+  G F   L+F +DYP  PP + F   + HPNIY +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A  ++ +N+ E+ R+V+
Sbjct:    1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of CK940137 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.446e-27
Identity = 63/145 (43.45%), Postives = 92/145 (63.45%), Query Frame = 1
Query:  226 KRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR----RVREIVE 645
            KRL  +   L      GIS  P  D++++ W   I GP DT ++G  FK+++ F  +YP  PPT+ F S M+HPN+   G+ICLDIL+++WS +Y+V  IL S+QSLL +PN  SP N++AA ++S++  EY R    R +EI E
Sbjct:   31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKEIDE 175          
The following BLAST results are available for this feature:
BLAST of CK940137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBC19_ARATH2.915e-2844.93Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UB2G2_PONAB2.915e-2838.27Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE2.915e-2838.27Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN2.915e-2838.27Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN2.915e-2838.27Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC11_YEAST4.971e-2842.25Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2N_DICDI8.480e-2841.61Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC9_SCHPO1.446e-2742.28SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC7_YEAST1.446e-2737.82Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC11_SCHPO1.446e-2743.45Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_B07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940137 ID=CK940137; Name=CK940137; organism=Citrus sinensis; type=EST; length=879bp
GGGGAAAAACAAAACAAAATTGGGACCGCTGACCTGAACGACTCTCTCTC
TCTCTCTCTTTTGTTTCTCTGATCAAATTGAGTACCATGGAATTCTTTCT
CTGATACCGCCTGCTTTTCGATTGTTTCCCGAGAAAAATCTCGCTGCGAT
TCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGCTCGTAGGC
AGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGA
GGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAAC
AGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATG
GGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAA
ATAAGCCACCAACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATT
TATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCC
AATTTACGATGTAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTG
ACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGC
GAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAG
TTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAA
TAGTCCAATGGCTTGTTCTAAATAACATTTAAGATTCAAAAGGTTGGTGG
TGTGAACTCTTGACATGTTTTATGTTTGTTTCGCCTTATGAGGATGGATG
GTTGGCCTCTTATTGTTAATTTCTCGTCTTTGGGTACATCGAAACTCNNN
NNNNAAAAAAAAAAAAAAAAAAAAAAAAA
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