CK940127

Overview
NameCK940127
Unique NameCK940127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.864e-16
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   79 EAMFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPK-----RTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            E   P  + + P  + DS      QV  ES++ +   +   S  + +     K       +  +HYRGVRRRPWGKFAAEIRD A+ G RIWLGTFE+            F++RG KA+LNF
Sbjct:   45 EPHVPKQEPDSPVLDPDSFVNEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNF 166          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.379e-16
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  250 KKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            K+HYRGVR RPWGKFAAEIRD  R G R+WLGTFET            FR+RG+KA+LNF
Sbjct:  134 KRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNF 193          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.332e-16
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   82 AMFPASQIELPFNENDSQDMVIYQVINESTAQNISFMPQRSEVHTSSMLEPKRTISK--------KHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            + F  S+ E    E +++  V    I+ ++ +  SF  ++  ++ +  ++ +  + K        KHYRGVR+RPWGKFAAEIRD  R G R+WLGTF+T            F++RG+KA++NF
Sbjct:   78 SFFNNSKTEFDSFEFETKPNVSAARISSNSPKQTSFKERKPSLNIAIPMKQQEVVQKVEVVPTEKKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNF 201          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.332e-16
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  229 EPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            +P     KKHYRGVR+RPWGKFAAEIRD  + G R+WLGTF+T            FR+RG+KA+LNF
Sbjct:  146 KPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNF 212          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.166e-15
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  190 MPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            +P + EV     L P     KKHYRGVR+RPWGKFAAEIRD  R G R+WLGTF+T            +++RG+KA++NF
Sbjct:  118 IPVKQEVVQKVELAPTE---KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNF 194          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.571e-14
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  259 YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            YRGVR+RPWGK+AAEIRDSARHG R+WLGTF T            F MRG +A+LNF
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNF 70          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.680e-14
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:  250 KKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            ++HYRGVRRRPWGK+AAEIRD  + G R+WLGTF+T            F++RG+KA+LNF
Sbjct:   69 QRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNF 128          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.572e-14
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  238 RTISKKH--YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            R +  +H  YRGVRRRPWGK+AAEIRDS +HG+R+WLGTF+T            + MRG  A+LNF
Sbjct:    6 RGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNF 71          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.971e-14
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1
Query:  259 YRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            YRGVRRRPWGK+AAEIRDS +HG+R+WLGTF+T            + MRG  A+LNF
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNF 76          
BLAST of CK940127 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.798e-14
Identity = 41/90 (45.56%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  160 NESTAQNISFMPQRSEVHTSSMLEPKRTISKKHYRGVRRRPWGKFAAEIRDSARHGQRIWLGTFETXXXXXXXXXXXXFRMRGAKALLNF 429
            N +  Q    +P  S   T S    K    ++HYRGVRRRPWGK+AAEIRD  + G RIWLGT++T            F++RG KA+LNF
Sbjct:   56 NSTLNQRKPPLPNLSVSRTVSTKTEKEE-EERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNF 144          
The following BLAST results are available for this feature:
BLAST of CK940127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
EF106_ARATH2.864e-1639.34Ethylene-responsive transcription factor ERF106 OS... [more]
EF103_ARATH6.379e-1663.33Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF5_TOBAC8.332e-1635.48Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH8.332e-1656.72Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF5_NICSY3.166e-1550.00Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF95_ARATH1.571e-1463.16Ethylene-responsive transcription factor ERF095 OS... [more]
EF105_ARATH2.680e-1456.67Ethylene-responsive transcription factor ERF105 OS... [more]
ERF96_ARATH4.572e-1454.55Ethylene-responsive transcription factor ERF096 OS... [more]
ERF97_ARATH5.971e-1459.65Ethylene-responsive transcription factor 14 OS=Ara... [more]
EF104_ARATH7.798e-1445.56Ethylene-responsive transcription factor ERF104 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_C04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940127 ID=CK940127; Name=CK940127; organism=Citrus sinensis; type=EST; length=798bp
GGGGAAACATCAGCCACCCGAATCCTATAGAATCAGAGCGCGCGATACCC
ATAAAACCAAAAGAAATAGCCGATCAAAGAAGCCATGTTTCCGGCCTCCC
AAATTGAGCTACCATTTAATGAAAATGATTCACAAGACATGGTCATATAC
CAAGTCATAAATGAATCGACGGCCCAAAATATTTCATTCATGCCTCAAAG
AAGCGAAGTTCACACATCAAGCATGCTTGAACCGAAACGGACCATAAGCA
AGAAGCACTACAGAGGCGTGAGGCGTCGGCCATGGGGCAAATTCGCGGCT
GAGATTCGAGACTCAGCCAGACACGGCCAACGGATATGGCTGGGCACGTT
TGAAACAGCAGAAGAGGCTGCCCTGGCTTACGATAGAGCTGCTTTTCGGA
TGCGTGGTGCTAAGGCGTTGCTTAATTTTCCGGCCGAAGTGGTTGCTGCT
CCGTGTCCATCATCTTCGCCATCGCTTGAAAAATCGAATGAAAAATTGAG
CTCAATATTGGAGAACAATCCAGAGGTGAGTGGCAGTAGCTCTAGCACGG
TTTCAACTGCGACTCAGAGATCGGAATCGGAGTAATTAAGTAGTCAAAGT
GCTAGTACTATTGGGGCGAGATTAATTACTTATAGACTAGCTGTTTAAAT
AATTTTCAGACTAGTGATTACAGGTATGAACTATGAATCATCTAGTTAAC
TATTAATTAAGTTAATTGTTAAGCAAGGCGTGAAATATTCCCAATTTAAT
TATTCAATGATTTAGATGTAAAAAAAAAAAAAAAAAAANNNAAAAAAA
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