CN188561

Overview
NameCN188561
Unique NameCN188561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 67/153 (43.79%), Postives = 82/153 (53.59%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITF-GLPDHENRQEIAAQYA 515
            PR VL  GPPGTGKT   + +AN      + V     + KY GE  R++  VF +A E  + AIIF+DE+D+ A  R      A R   RIL  LL Q+DGFEQ   V VI ATNR   LDPAL+   R D  I F  L D   R+ I +  A
Sbjct:  200 PRGVLLYGPPGTGKTMLVKAVANSTTASFIRVNGSEFVQKYLGEGPRMVRDVFRMARE-NSPAIIFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFEQSSNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTIA 351          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 60/144 (41.67%), Postives = 80/144 (55.56%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEI 500
            PR VL  GPPGTGKT   R +A +A   +  +    V+ KY GE+E  L K+F  A      +IIF+DE+D+ A  R  ++ EA  R ++ LL  +DG     KVVVIAATNR   +D AL    R +  I  G+PD   R +I
Sbjct:  313 PRGVLLYGPPGTGKTMVMRAVAAEANAQVFTIDGPSVVGKYLGETESRLRKIFEDARA-HQPSIIFIDEIDALAPKRTEDVSEAESRAVATLLTLLDGMANAGKVVVIAATNRPNSIDEALRRPGRLEKEIEIGIPDKSARLDI 455          

HSP 2 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 62/192 (32.29%), Postives = 101/192 (52.60%), Query Frame = 3
Query:   45 ETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIA---AQYAKHXXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            ET  +     P+ VL  GPPG  KT  A+ IA + G+  + V    +  K+ GESER + +VF  A +  + ++IF DE+D+    R  +   ++ R+++ LL ++DG E  + V+V+AATNR   +DPAL+   R D ++  G P+ E R++I    A+  K                 SG ++  +CQ+A
Sbjct:  572 ETFSRLGVRPPKGVLLYGPPGCSKTITAKAIATETGLNFIAVKGPELFDKFVGESERAVRQVFQKARQ-ASPSVIFFDEIDALTANRGED--NSSDRVVAALLNELDGIEALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQIVKIQAEKMKFAEDVDLDLIAEKTEGCSGAEVVALCQEA 760          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_PIG (Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +F++A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   D +V+V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  373 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEVDSLLRERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETR 511          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 500
            PE+++ + +E         P+ VL  GPPG GKT  A+ +AN      + V    ++ K+ GE  RL+ ++F +A E     IIF+DE+D+    R  E     R   R L  LL ++DGF+    V VIAATNR   LDPAL+   RFD +I   LPD   R EI
Sbjct:  161 PELFEKVGIEP--------PKGVLLYGPPGCGKTLMAKAVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKE-KAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEI 317          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 64/185 (34.59%), Postives = 92/185 (49.73%), Query Frame = 3
Query:   75 PRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            P+ VL  GPPGTGKT CAR +AN+     + V    ++ KY GE  R++ ++F +A       +IF DE+D+   AR  +        +R +  L+ Q+DGF+    + V+ ATNR   LDPAL+   R D  I F LPD E R  I   +A+                    +G +IR VC +A
Sbjct:  209 PKGVLLFGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA-RTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEA 392          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   18 PEVYDDIALETRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEIAAQYAKH---XXXXXXXXXXXXXXXMSGRDIRDVCQQA 605
            PE+Y+DI ++         P+ V+  G PGTGKT  A+ +AN      + V    ++ KY G+  +L+ ++F +A++L + +I+F+DE+D+    R    S      +R +  LL Q+DGF+    V VI ATNR + LDPAL+   R D  I F LPD + R+ I   +                      SG DI+ +C +A
Sbjct:  211 PELYEDIGIKP--------PKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDL-SPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEA 405          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_RAT (Katanin p60 ATPase-containing subunit A1 OS=Rattus norvegicus GN=Katna1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 75/224 (33.48%), Postives = 107/224 (47.77%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRGQITKD-----GEQACLPPLQEYIESA 701
            + VL  GPPGTGKT  A+ +A +       V    + SKY GESE+L+  +F +A    + A IF+DE+DS    R  SE HEA+RR+ + LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R+E+     +                M   SG DI +VC+ A      + I G   ++      E+  +P   E  E A
Sbjct:  243 KGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVNLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSREEMHMPTTMEDFEMA 465          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_MACFA (Katanin p60 ATPase-containing subunit A1 OS=Macaca fascicularis GN=KATNA1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 75/224 (33.48%), Postives = 107/224 (47.77%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRGQITKD-----GEQACLPPLQEYIESA 701
            + VL  GPPGTGKT  A+ +A +       V    + SKY GESE+L+  +F +A    + A IF+DE+DS    R  SE HEA+RR+ + LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R+E+     +                M   SG DI +VC+ A      + I G   ++      E+  +P   E  E A
Sbjct:  243 KGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHMPTTMEDFEMA 465          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: KTNA1_HUMAN (Katanin p60 ATPase-containing subunit A1 OS=Homo sapiens GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 75/224 (33.48%), Postives = 107/224 (47.77%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR-DSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQAERSWASKIIRGQITKD-----GEQACLPPLQEYIESA 701
            + VL  GPPGTGKT  A+ +A +       V    + SKY GESE+L+  +F +A    + A IF+DE+DS    R  SE HEA+RR+ + LL Q+DG        +  K V+V+AATN   D+D AL  R +  I   LP  + R+E+     +                M   SG DI +VC+ A      + I G   ++      E+  +P   E  E A
Sbjct:  243 KGVLMVGPPGTGKTLLAKAVATECKTTFFNVSSSTLTSKYRGESEKLVRLLFEMA-RFYSPATIFIDEIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGTSENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPSAKGREELLRISLRELELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEMHMPTTMEDFEMA 465          
BLAST of CN188561 vs. ExPASy Swiss-Prot
Match: SPAST_CHICK (Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   78 RAVLFEGPPGTGKTSCARVIANQAGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENR 491
            R +L  GPPG GKT  A+ +A ++      +    + SKY GE E+L+  +F++A EL   +IIF+DEVDS    R    H+A+RR+ +  L + DG +   + +++V+ ATNR Q+LD A++ RF   +   LP+ E R
Sbjct:  373 RGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSSGEDRILVMGATNRPQELDDAVLRRFTKRVYVSLPNEETR 511          
The following BLAST results are available for this feature:
BLAST of CN188561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 381
Match NameE-valueIdentityDescription
PRS6B_ASPNG7.008e-2143.7926S protease regulatory subunit 6B homolog OS=Aspe... [more]
AFG2_SCHPO7.008e-2141.67ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
SPAST_PIG9.153e-2139.29Spastin (Fragment) OS=Sus scrofa GN=SPAST PE=2 SV=... [more]
PSMR_THEGJ9.153e-2138.55Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS7_PONAB9.153e-2134.5926S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS4A_ARATH9.153e-2132.3526S proteasome regulatory subunit 4 homolog A OS=A... [more]
KTNA1_RAT9.153e-2133.48Katanin p60 ATPase-containing subunit A1 OS=Rattus... [more]
KTNA1_MACFA9.153e-2133.48Katanin p60 ATPase-containing subunit A1 OS=Macaca... [more]
KTNA1_HUMAN9.153e-2133.48Katanin p60 ATPase-containing subunit A1 OS=Homo s... [more]
SPAST_CHICK1.195e-2037.86Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188561 ID=CN188561; Name=CN188561; organism=Citrus sinensis; type=EST; length=707bp
ACATTTTAGCTTCAAGCCCTGAAGTATATGATGATATTGCCCTTGAAACT
CGGTGTAAGTTTGAGTCGAATAGACCTAGGGCTGTGCTCTTTGAAGGTCC
ACCAGGTACAGGGAAGACATCATGTGCTCGTGTTATTGCTAATCAAGCGG
GTGTTCCATTGATGTATGTGCCACTGGAGGTTGTCATGTCAAAATACTAC
GGTGAAAGTGAGCGGCTATTGGGGAAAGTGTTTTCTCTTGCCAATGAGCT
TCCAAACGGAGCTATTATTTTCCTGGACGAGGTTGATTCTTTTGCTGTTG
CTCGTGATAGTGAAATGCATGAAGCTACCCGAAGAATTTTGTCCGTGTTG
TTGAGACAGATTGATGGATTCGAACAGGATAAAAAGGTGGTGGTGATTGC
TGCAACAAATAGAAAGCAAGACCTTGATCCTGCTTTAATAAGTCGGTTTG
ATTCAATGATTACCTTTGGCCTACCGGATCATGAGAATCGTCAGGAAATA
GCAGCTCAGTATGCAAAGCACCTAACAAAAGCTGAACTGGCCGAATTAGC
CACTGCTACAGAGGAAATGTCGGGAAGAGATATTAGGGATGTGTGTCAAC
AAGCAGAGCGATCATGGGCATCAAAGATAATTCGAGGGCAAATCACTAAG
GATGGAGAACAGGCTTGTCTTCCACCTCTACAAGAATACATTGAGAGTGC
TACAAAC
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